View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19584_high_1 (Length: 686)
Name: NF19584_high_1
Description: NF19584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19584_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 546; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 18 - 672
Target Start/End: Complemental strand, 34304783 - 34304114
Alignment:
| Q |
18 |
gaagagaacagcgtgctgagagttattggagaaaggaagaaagaagtggagaagaaaggtgatcgttggcatagagctgaaagatcatatggaaaatttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34304783 |
gaagagaacagcgtgctgagagttattggagaaaggaagaaagaagtggagaagaaaggtgatcgttggcatagagctgaaagatcatatggaaaatttt |
34304684 |
T |
|
| Q |
118 |
ggaggcaatttagattgcctgaaaatgctgatttggattctgtgaaggctaagatagaaaatggtgttcttactttgacacttaataagttgtctcatga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34304683 |
ggaggcaatttagattgcctgaaaatgctgatttggattctgtgaaggctaagatagaaaatggtgttcttactttgacacttaataagttgtctcatga |
34304584 |
T |
|
| Q |
218 |
tcagattaaaagtactagagttgttagcattgatgaggagaatgagaaatcacacaaggtcaacaatgacggggctaataacaatgagctttgaaatatc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34304583 |
tcagattaaaagtactagagttgttagcattgatgaggagaatgagaaatcacccaaggtcaacaatgatggggctaataacaatgagctttgaaatatc |
34304484 |
T |
|
| Q |
318 |
atcaatattgctgtcatagaaagaaaattgctttttaattccgtgtttgtttaaataaagagatttcatcgaaatcttggttgtttttgttgttgtgatg |
417 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
34304483 |
atcaatattgttgtcatagaaagaaaattgctttttaattccgtgtttgtttgaataaagagatttcatcaaaatcttggttgtttttgttgttgtgatg |
34304384 |
T |
|
| Q |
418 |
gatgtagtcacttgttcgatgatgaatgagtgtgtctagttttcttttaagtgtgtcggtgtcataatgggtctttttgttgctgctgctgttgttg--- |
514 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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|
| T |
34304383 |
gatgtagtcacttgttcgatgatgaatgagtgtgtctagttttcttttaagtgtgtcggtgtcataatgggtctttttgttgctactgttgttgttgttg |
34304284 |
T |
|
| Q |
515 |
ttgtgatggatatagtcttcgctcttctagtgtgtctaga---nnnnnnnnnagtgtgtctagtgttgtaatgggtattgtaatggttttttgtgtctct |
611 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34304283 |
ttgtgatggatatagtcttcactcttctagtgtgtctagattttttttttttagtgtgtctagtgttgtaatgggtattgtaatggttttttgtgtctct |
34304184 |
T |
|
| Q |
612 |
ataaa--ttctct-------tttgatatttgttgaaagtattatattgtcattgaatattgtcttctgtg |
672 |
Q |
| |
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||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34304183 |
ataaaacttctctttttatgtttgatatttgttgaaagtattatattgtcattgaatattgtcttctgtg |
34304114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 33426288 - 33426585
Alignment:
| Q |
18 |
gaagagaacagcgtgctgagagttattggagaaaggaagaaagaagtggagaagaaaggtgatcgttggcatagagctgaaagatcatatggaaaatttt |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33426288 |
gaagagaacagcgtgctgagagtgattggagaaagaaagaaagaagaggagaaaaaaggtgatcgttggcatagagctgaaagatcatatggaaaatttt |
33426387 |
T |
|
| Q |
118 |
ggaggcaatttagattgcctgaaaatgctgatttggattctgtgaaggctaagatagaaaatggtgttcttactttgacacttaataagttgtctcatga |
217 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||| |||||| ||||||||| |||| |
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| T |
33426388 |
ggagacagtttagattgcctgaaaatgctgatttggattcggttaaggccaagatggaaaatggtgttcttactttaacacttcgtaagttgtcacatgg |
33426487 |
T |
|
| Q |
218 |
tcagattaaaagtactagagttgttagcattgatgaggagaatgagaaatcacacaaggtcaacaatgacggggctaataacaatgagctttgaaata |
315 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||| ||||||||||||||| || |||| | | | |||| | ||||||||||||||||||| |||||| |
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|
| T |
33426488 |
taagattaaaagtactagacttgttagcattgaggaggagaatgagaaagcaagcaagcttagcgatgatgaggctaataacaatgagcttggaaata |
33426585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 23 - 315
Target Start/End: Original strand, 34314456 - 34314751
Alignment:
| Q |
23 |
gaacagcgtgctgagagttattggagaaaggaagaaagaagtggagaagaaaggtgatcgttggcatagagctgaaagatcatatggaaaattttggagg |
122 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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|
| T |
34314456 |
gaacagcgtgctgagtgtgattggagaaaggaagaaagaagtggagaagaaaggtgatcgttggcatagagctgaaaggatgtatggaaaattctggaga |
34314555 |
T |
|
| Q |
123 |
caatttagattgcctgaaaatgctgatttggattctgtgaaggctaagatagaaaatggtgttcttactttgacacttaataagttgtctcatg---atc |
219 |
Q |
| |
|
|| |||||||||| || ||||||||||| ||||| |||||||||||| | |||||||||||||||| |||||||||||||||| |||| |||| ||| |
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|
| T |
34314556 |
cagcttagattgccggagaatgctgattttgattccgtgaaggctaaggtggaaaatggtgttcttattttgacacttaataagctgtcccatgaatatc |
34314655 |
T |
|
| Q |
220 |
agattaaaagtactagagttgttagcattgatgaggagaatgagaaatcacacaaggtcaacaatgacggggctaataacaatgagctttgaaata |
315 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||| |||| | || ||||| |||||||||| || ||| |||||||||| |
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|
| T |
34314656 |
agattaaaagtattagagttgttagcattgataaggagaatgagaaatcaggcaagcttaataatgatggggctaataccactgaactttgaaata |
34314751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 48 - 266
Target Start/End: Complemental strand, 34322928 - 34322710
Alignment:
| Q |
48 |
gaaaggaagaaagaagtggagaagaaaggtgatcgttggcatagagctgaaagatcatatggaaaattttggaggcaatttagattgcctgaaaatgctg |
147 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| ||||||||||| ||||||||| ||||| ||||| |||||||||||||||||||||||||||| || |
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|
| T |
34322928 |
gaaaggaagaaagaagaagagaaacaaggtgatcattggcatagagttgaaagatcttatgggaaattctggaggcaatttagattgcctgaaaatgttg |
34322829 |
T |
|
| Q |
148 |
atttggattctgtgaaggctaagatagaaaatggtgttcttactttgacacttaataagttgtctcatgatcagattaaaagtactagagttgttagcat |
247 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| |||| ||| || ||||| | |||||||| |
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|
| T |
34322828 |
atttggattcagtgaaggctaagatggaaaatggtgtacttactttgacacttaataagttgtcacatgataagatcaaaggtcctagaatggttagcat |
34322729 |
T |
|
| Q |
248 |
tgatgaggagaatgagaaa |
266 |
Q |
| |
|
|| ||||||| |||||||| |
|
|
| T |
34322728 |
tgctgaggaggatgagaaa |
34322710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 34312013 - 34312258
Alignment:
| Q |
18 |
gaagagaacagcgtgctgagagttattggagaaaggaagaaagaagtggagaagaaaggtgatcgttggcatagagctgaaagatcatatggaaaatttt |
117 |
Q |
| |
|
||||||||||| ||| ||||||| | ||| |||||||||||||||| ||||| ||||||||| |||||| |||| ||||||||| ||||||||||| | |
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|
| T |
34312013 |
gaagagaacagggtgttgagagtgagtggtgaaaggaagaaagaagaagagaaacaaggtgatcattggcacagagttgaaagatcttatggaaaattct |
34312112 |
T |
|
| Q |
118 |
ggaggcaatttagattgcctgaaaatgctgatttggattctgtgaaggctaagatagaaaatggtgttcttactttgacacttaataagttgtctcatga |
217 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||| || || |||||||| || ||||||||||| |||||||||||||||||||||||||| || || |
|
|
| T |
34312113 |
ggaggcaatttagattgccagaaaatgttgatttggactcagttaaggctaaaatggaaaatggtgtacttactttgacacttaataagttgtcacaaga |
34312212 |
T |
|
| Q |
218 |
tcagattaaaagtactagagttgttagcattgatgaggagaatgag |
263 |
Q |
| |
|
| ||| |||| || ||||| | |||||||||| |||||||| |||| |
|
|
| T |
34312213 |
taagactaaaggtcctagaatggttagcattgctgaggagagtgag |
34312258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 20 - 315
Target Start/End: Complemental strand, 34317300 - 34317010
Alignment:
| Q |
20 |
agagaacagcgtgctgagagttattggagaaaggaagaaagaagtggagaagaaaggtgatcgttggcatagagctgaaagatcatatggaaaattttgg |
119 |
Q |
| |
|
||||||| || |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| | || |||||| || |||||||| ||| |
|
|
| T |
34317300 |
agagaacggcatgctgagaattattggagaaaggaagaaagaagctgagaaaaaaggtgatcgttggcacaaagttgaaagggtgtacggaaaattctgg |
34317201 |
T |
|
| Q |
120 |
aggcaatttagattgcctgaaaatgctgatttggattctgtgaaggctaagatagaaaatggtgttcttactttgacacttaataagttgtctcatgatc |
219 |
Q |
| |
|
|| || || |||||||| || ||||||||||||||||| | |||||||| | |||||||| ||||||||||||||| ||||||||||||| |||| | |
|
|
| T |
34317200 |
agacagttaagattgccagagaatgctgatttggattcaattaaggctaataaggaaaatggagttcttactttgacatttaataagttgtcgcatggta |
34317101 |
T |
|
| Q |
220 |
agattaaaagtactagagttgttagcattgatgaggagaatgagaaatcacacaaggtcaacaatgacggggctaataacaatgagctttgaaata |
315 |
Q |
| |
|
|||| ||| || | ||||||||| ||||||||| ||||||||||| |||| |||| ||| | |||| || || || ||| |||||||||| |
|
|
| T |
34317100 |
agatcaaaggttc-----ttgttagcaaggatgaggaggatgagaaatcaggcaagatcaataataatggggatagtagcactgaactttgaaata |
34317010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 25651418 - 25651244
Alignment:
| Q |
19 |
aagagaacagcgtgctgagagttattggagaaaggaagaaagaagtggagaagaaaggtgatcgttggcatagagctgaaagatcatatggaaaattttg |
118 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||| |||||| ||| |||||||||||||||||| |||||| | ||||||||| || |
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|
| T |
25651418 |
aagagaacagcgtgctaagagttattggagaaaggaaaaaagaacaggagaacaaaagtgatcgttggcatagagttgaaaggatgtgtggaaaattctg |
25651319 |
T |
|
| Q |
119 |
gaggcaatttagattgcctgaaaatgctgatttggattctgtgaaggctaagatagaaaatggtgttcttacttt |
193 |
Q |
| |
|
||| ||| ||||||| || ||||||| |||||||||||| | ||| | ||||| ||| |||||||||||||||| |
|
|
| T |
25651318 |
gagacaacttagattaccagaaaatgttgatttggattcgattaagacaaagatggaagatggtgttcttacttt |
25651244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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