View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19584_high_2 (Length: 644)

Name: NF19584_high_2
Description: NF19584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19584_high_2
NF19584_high_2
[»] chr1 (1 HSPs)
chr1 (18-644)||(31081015-31081642)


Alignment Details
Target: chr1 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 18 - 644
Target Start/End: Original strand, 31081015 - 31081642
Alignment:
Q  18 gagaatacatgtgtaatctaatcagcaagcacaatttagtggtagaaaacgggggaaataaaaattgatagttttgaacctgcatctcctttattcacca 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31081015 gagaatacgtgtgtaatctaatcagcaagcacaatttagtggtagaaaacgggggaaataaaaattgatagttttgaacctgcatctcctttattcacca 31081114  T
Q  118 c-catctcctctgcatgggacaaatgataaatattcacagtccataatggcgtcagttgtgacgaacgagttataatgaagtaagcaaaatacataaaag 216  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31081115 ctcatctcctctgcatgggacaaatgataaatattcacagtccataatggcgtcagttgtgacgaacgagttataatgaagtaagcaaaatacataaaag 31081214  T
Q  217 ttaggtaaggccaatattttcttgtggcaaatttgggaatgaaatacatttctttatttctttttaatactatttctttgtctttggccaaataacattt 316  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31081215 ttagataaggccaatattttcttgtggcaaatttgggaatgaaatacatttctttatttctttttaatactatttctttgtctttggccaaataacattt 31081314  T
Q  317 agatatagttagacgtttattatgtatgaactactttttaagnnnnnnnnnncttttgctacatattgattttttaggccataaattattttcacaatta 416  Q
    ||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31081315 agatatagttagacgtttattatgtatgaactactttttaagttttctttttcttttgctacatattgattttttaggccataaattattttcacaatta 31081414  T
Q  417 ccctcttttcactagacttaattaattaaaatatgattatgtggacgtttagtgttatattggtgtgttcaaaattcaaatttattgcactcaaaactat 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  31081415 ccctcttttcactagacttaattaattaaaatatgattatgtggacgtttagtgttatattggtgggttcaaaattcaaatttattgcactcaaaattat 31081514  T
Q  517 gataggtggtagagatgtggtgttggagtgggtaggtggattgatgacaatattggtagagatgtaggcgatggtgataaaactctttttaggtggtgtg 616  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  31081515 gattggtggtagagatgtggtgttggagtgggtaggtggattgatgacaatattggtagagatgtaggcgatggtaatacaactctttttaggtggtgtg 31081614  T
Q  617 gtgttgaaaaatggtaacaatgatttgc 644  Q
    ||||||||||||||||||||||||||||    
T  31081615 gtgttgaaaaatggtaacaatgatttgc 31081642  T

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