View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19584_high_3 (Length: 635)
Name: NF19584_high_3
Description: NF19584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19584_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Complemental strand, 274057 - 273500
Alignment:
| Q |
1 |
ggaaggaggatgattgatcggtgtaggatatttaaaagggggtgggaatgaaaaaagagggatggggatagtaatgagaaacacacgtaaacgggccggg |
100 |
Q |
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| T |
274057 |
ggaaggaggatgattgatcggtgtaggatatttaaaaaggggtgggaatgaaaaaagagggatggggatagtaatgagaaacacacgtaaacgggccggg |
273958 |
T |
|
| Q |
101 |
tcgggcgataatcactgagtggctgctaagtctggttgattttgaaattgaaatctatc-aaaaacagaagacagacaatttgaaaatttgaaataaatt |
199 |
Q |
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|||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
273957 |
tcgggcgataataactcagtggctg---agtctggttgattttgaaattgaaatctatcaaaaaacagaagacagagaatttgaaaatttgaaataaatt |
273861 |
T |
|
| Q |
200 |
gaatacaaacac--acactcaatcgaatctaaagagtaaaagaaattgttgtgttttggaaaccctagattagatagataggtagtgagttgaacaatgg |
297 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
273860 |
gaatacaaacacaaacactttatcgaatctaaagagtaaaagaaattgttgtgttttggaaaccctagattagatagataggtagtgagttgaacaatgg |
273761 |
T |
|
| Q |
298 |
------caacaccaacaacagtggtatcctccggtcgagaattaacaaaccctccgtcagacggaatctcaaacattcgattctcaaaccacagtgatca |
391 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
273760 |
caacaacaacaacaacaacagtggtatcctccggtcgagaattaacaaaccctccgtcagacggaatctcaaacattcgattctcaaaccacagtgatca |
273661 |
T |
|
| Q |
392 |
tcttcttgtctcctcttgggacaaaactgttcgtctttatgatgcaaccgcagatgttcttagaggtgagttccttcacggcggacctgttcttgactgt |
491 |
Q |
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| T |
273660 |
tcttcttgtctcctcttgggacaaaactgttcgtctttatgatgcaaccgcagattttcttagaggtgagttccttcacggcggacctgttcttgactgt |
273561 |
T |
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| Q |
492 |
tgctttcatgatgactcttctggtttcagtgcctccgccgataacactgtcagacggtcag |
552 |
Q |
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| T |
273560 |
tgctttcatgatgactcttctggtttcagtgcctccgccgataacactgtcagacggtcag |
273500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 575 - 619
Target Start/End: Complemental strand, 273481 - 273437
Alignment:
| Q |
575 |
cacctttccattttctcaccagatccattcttagttctcatttct |
619 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
273481 |
cacctttccattttctcaccagatccattcttagttctcatttct |
273437 |
T |
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