View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19584_high_5 (Length: 420)
Name: NF19584_high_5
Description: NF19584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19584_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 14 - 405
Target Start/End: Complemental strand, 46397169 - 46396780
Alignment:
| Q |
14 |
ttctagagtaaccatacaaagggtcgaagaaattctaattctaattaatctctacccctcaaaattgcaggctacgaaagcctcacactcacagtacaac |
113 |
Q |
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| T |
46397169 |
ttctagagtaaccatacaaagggtcgaagaaattctaattctaattaatctctacccctcaaaattgcaggctacgaaagcctcacactcacagtaccac |
46397070 |
T |
|
| Q |
114 |
gacaacattttcttggtaaacaacaatggaaggacgagaattcagggctcatagtggtcagcggaaggatgatctataaaataattcaaagcgctaaatt |
213 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46397069 |
gacaacattttcttggtaaacaacaacggaaggacgagaattcagggctcatagtggtcagcggaaggatgatctataaaataattcaaagcgctaaatt |
46396970 |
T |
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| Q |
214 |
cagggttaaacaatggaacccaagtctctactgatgtacatcattccattggctgcatcacaatttacaaatctgaacttaaaattgcttttatcaaaac |
313 |
Q |
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| T |
46396969 |
cagggttaaac-atggaacccaagtctctactgatgtacatcattccattggctgcatcacaatttagaaatctgaacttaaaattgcttttatcaaaac |
46396871 |
T |
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| Q |
314 |
caagattattaacagatttcaagttcaagtggcatacaaataaacagctaaagccaaaggctataacaaaacacatatttcttagaaaaaat |
405 |
Q |
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| T |
46396870 |
caagattattaaca-atttcaagttcaagtggcatacaaataaacggctaaagccaaaggctataacaaaacacatatttcttagaaaaaat |
46396780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 7217056 - 7216893
Alignment:
| Q |
14 |
ttctagagtaaccatacaaagggtcgaagaaattctaattctaattaatc-tctacccctcaaaattgcaggctacgaaagcctcacactcacagtacaa |
112 |
Q |
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| T |
7217056 |
ttctagagtggccataaatagggtcgaagaaactctaattctacttaatcctctactccacaaaattgcaggctaagaaagcctcacactcacagtacca |
7216957 |
T |
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| Q |
113 |
cgacaacattttcttggtaaacaacaatggaaggacgag-aattcagggctcatagtggtcagc |
175 |
Q |
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| |||| ||||||||| |||||||| |||||| ||| |||| ||||||||||||||||||| |
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| T |
7216956 |
cagcaaccttttcttgggaaacaacagcagaaggatgagcaattaagggctcatagtggtcagc |
7216893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 275 - 404
Target Start/End: Complemental strand, 7222241 - 7222109
Alignment:
| Q |
275 |
aatttacaaatctgaacttaaaattgcttttatcaaaaccaagattat-taacagatttcaag-ttcaagtggcatacaaataaacagctaaagccaaag |
372 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||| || || ||||||||||||| |||| |||||||||| || || |||||||||||||| |
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| T |
7222241 |
aatttagaaatttgaacttaaaattgcttttatcaaaaccaaaatcataaaacagatttcaagtttcaggtggcatacagattaaaagctaaagccaaag |
7222142 |
T |
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| Q |
373 |
gctataacaaaac-acatatttcttagaaaaaa |
404 |
Q |
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|||||| |||||| |||||||| | |||||||| |
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| T |
7222141 |
gctatatcaaaacaacatatttttgagaaaaaa |
7222109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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