View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19584_high_6 (Length: 398)
Name: NF19584_high_6
Description: NF19584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19584_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 27 - 381
Target Start/End: Original strand, 44407285 - 44407645
Alignment:
| Q |
27 |
ctctcagtatgccaaggtgctttgtcttatacagatggtaagttcttaattcccaactctatatgcaatgtaatggtgttttgatttcaatcaacttaa- |
125 |
Q |
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| T |
44407285 |
ctctcagtatgccaaggtgctttgtcttatacagatggtaagttcttaattcccaacactatatgcaatgtaatggtgttttgatttcaatcaccttaat |
44407384 |
T |
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| Q |
126 |
---ttcattgatgttagtatttattgctaactaataaccgaaatgtaatttatgtgattattaggatctaactatattcaatgcaagtgttttattgatc |
222 |
Q |
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| T |
44407385 |
taattcattgatgttagtatttattgctaactaataaccgaaatgtaatttatgtgattattaggatctaactatattcaatgcaagtgttttattgatc |
44407484 |
T |
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| Q |
223 |
atctccaaatgttcacttacttaaaagt--aacattaatgttgtacttcaattttagattcttaaactttaannnnnnnngacttagaatttatcatata |
320 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44407485 |
atctccaaatgttcacttacttaaaagttcaacattaatgttgtacttcaattttagattcttaaactttaaatttttttgacttagaatttatcatatt |
44407584 |
T |
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| Q |
321 |
tgttgtgtttggttttactatctattttgatatgcttggctgtcatggttttacctaatag |
381 |
Q |
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| T |
44407585 |
tgttgtgtttggttttactatctattttgatatgcttggctgtcatggttttacctaatag |
44407645 |
T |
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