View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19584_low_8 (Length: 309)

Name: NF19584_low_8
Description: NF19584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19584_low_8
NF19584_low_8
[»] scaffold0065 (1 HSPs)
scaffold0065 (9-100)||(66585-66676)
[»] chr8 (1 HSPs)
chr8 (9-100)||(12700500-12700591)
[»] chr7 (4 HSPs)
chr7 (16-100)||(10015476-10015560)
chr7 (16-100)||(37548517-37548601)
chr7 (9-100)||(36628747-36628838)
chr7 (9-70)||(15995301-15995362)
[»] chr5 (5 HSPs)
chr5 (9-100)||(32699027-32699118)
chr5 (9-100)||(43323454-43323545)
chr5 (17-100)||(21491762-21491845)
chr5 (9-81)||(5120479-5120551)
chr5 (50-98)||(5578570-5578618)
[»] chr3 (2 HSPs)
chr3 (9-100)||(33443821-33443912)
chr3 (9-100)||(9467204-9467295)
[»] chr4 (1 HSPs)
chr4 (16-100)||(56366618-56366702)
[»] chr6 (1 HSPs)
chr6 (9-100)||(4090516-4090606)
[»] chr2 (2 HSPs)
chr2 (9-100)||(9913262-9913353)
chr2 (21-82)||(43672587-43672648)


Alignment Details
Target: scaffold0065 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 66585 - 66676
Alignment:
Q  9 attatactcaagtgctaaaattgaagtctatatttctcaaatgctaaaatttcagtctactttgtatgtgctacatttctttacttttacta 100  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  66585 attattctcaagtgctaaaattttagtctatatttctcaaatgctaaaatttcagtctactttgtatgtgctacaattctttacttttacta 66676  T

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Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 12700500 - 12700591
Alignment:
Q  9 attatactcaagtgctaaaattgaagtctatatttctcaaatgctaaaatttcagtctactttgtatgtgctacatttctttacttttacta 100  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12700500 attattctcaagtgctaaaattttagtctatatttctcaaatgctaaaatttcagtctactttgtatgtgctacagttctttacttttacta 12700591  T

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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 10015560 - 10015476
Alignment:
Q  16 tcaagtgctaaaattgaagtctatatttctcaaatgctaaaatttcagtctactttgtatgtgctacatttctttacttttacta 100  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10015560 tcaagtgctaaaattttagtctatatttctcaaatgctaaaatttcagtctactttgtatgtgctacagttctttacttttacta 10015476  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 37548601 - 37548517
Alignment:
Q  16 tcaagtgctaaaattgaagtctatatttctcaaatgctaaaatttcagtctactttgtatgtgctacatttctttacttttacta 100  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||    
T  37548601 tcaagtgctaaaattttagtctatatttctcaaatgctaaaatttcagtctattttatatgtgctacagttctttacttttacta 37548517  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 36628747 - 36628838
Alignment:
Q  9 attatactcaagtgctaaaattgaagtctatatttctcaaatgctaaaatttcagtctactttgtatgtgctacatttctttacttttacta 100  Q
    ||||| ||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||| ||||| || | ||||||||||||||||    
T  36628747 attattctcaagtgctaaaattttagtctatatttctcaaatgctaaaatttaagtctactttgcatgtgttatagttctttacttttacta 36628838  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 15995301 - 15995362
Alignment:
Q  9 attatactcaagtgctaaaattgaagtctatatttctcaaatgctaaaatttcagtctactt 70  Q
    ||||| |||| |||||||||||  ||||| ||||| ||| ||||||||||||||| ||||||    
T  15995301 attattctcaggtgctaaaattttagtctttatttttcagatgctaaaatttcagcctactt 15995362  T

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Target: chr5 (Bit Score: 72; Significance: 9e-33; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 32699027 - 32699118
Alignment:
Q  9 attatactcaagtgctaaaattgaagtctatatttctcaaatgctaaaatttcagtctactttgtatgtgctacatttctttacttttacta 100  Q
    ||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  32699027 attattctcaagtgctaaaattttagtctatatttctcaaatgctaaaatttcagtctactttgtatgtgttacagttctttacttttacta 32699118  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 43323545 - 43323454
Alignment:
Q  9 attatactcaagtgctaaaattgaagtctatatttctcaaatgctaaaatttcagtctactttgtatgtgctacatttctttacttttacta 100  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||    
T  43323545 attattctcaagtgctaaaattttagtctatatttctcaaatgctaaaatttcagtctattttgtatgtgctacagttctttacctttacta 43323454  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 21491845 - 21491762
Alignment:
Q  17 caagtgctaaaattgaagtctatatttctcaaatgctaaaatttcagtctactttgtatgtgctacatttctttacttttacta 100  Q
    ||||||||||||||  ||||| |||||||    ||||||||||| | ||||||||||| |||||| |||| || ||||||||||    
T  21491845 caagtgctaaaattttagtctctatttctttggtgctaaaattttaatctactttgtacgtgctagatttattaacttttacta 21491762  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 5120551 - 5120479
Alignment:
Q  9 attatactcaagtgctaaaattgaagtctatatttctcaaatgctaaaatttcagtctactttgtatgtgcta 81  Q
    ||||| || |||||||||||||  ||| | ||||| |||  || ||||||||||||||||||||||| |||||    
T  5120551 attattcttaagtgctaaaatttcagtttctatttttcaggtgttaaaatttcagtctactttgtatatgcta 5120479  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 5578618 - 5578570
Alignment:
Q  50 tgctaaaatttcagtctactttgtatgtgctacatttctttacttttac 98  Q
    ||||||||||||||||||||||| || |||||  ||||| |||||||||    
T  5578618 tgctaaaatttcagtctactttgcatatgctatttttctctacttttac 5578570  T

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Target: chr3 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 33443821 - 33443912
Alignment:
Q  9 attatactcaagtgctaaaattgaagtctatatttctcaaatgctaaaatttcagtctactttgtatgtgctacatttctttacttttacta 100  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  33443821 attattctcaagtgctaaaattttagtctatatttctcaaatgctaaaatttcagtctattttgtatgtgctacagttctttacttttacta 33443912  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 9467295 - 9467204
Alignment:
Q  9 attatactcaagtgctaaaattgaagtctatatttctcaaatgctaaaatttcagtctactttgtatgtgctacatttctttacttttacta 100  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||    
T  9467295 attattctcaagtgctaaaattttagtctatatttctcaaatgctaaaatttcagtctattttatatgtgctacagttctttacttttacta 9467204  T

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Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 56366702 - 56366618
Alignment:
Q  16 tcaagtgctaaaattgaagtctatatttctcaaatgctaaaatttcagtctactttgtatgtgctacatttctttacttttacta 100  Q
    |||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  56366702 tcaagtgctaaaattttaatctatatttctcaaatgctaaaatttcagtctactttgtatgtgctacagttctttacttttacta 56366618  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 4090606 - 4090516
Alignment:
Q  9 attatactcaagtgctaaaattgaagtctatatttctcaaatgctaaaatttcagtctactttgtatgtgctacatttctttacttttacta 100  Q
    ||||| ||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||| |||||| ||| |||| |||||||||||    
T  4090606 attattctcaagtgctaaaattttagt-tatatttctcaaatgctaaaatttcagtctactttgcatgtgcgacagttctctacttttacta 4090516  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 9913262 - 9913353
Alignment:
Q  9 attatactcaagtgctaaaattgaagtctatatttctcaaatgctaaaatttcagtctactttgtatgtgctacatttctttacttttacta 100  Q
    ||||| ||||||||||||||||  ||||||||| | | | |||||||||||||||| ||||||| |||||||||| |||| |||||| ||||    
T  9913262 attattctcaagtgctaaaattttagtctatatctatgagatgctaaaatttcagtttactttgcatgtgctacagttctctactttaacta 9913353  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 43672648 - 43672587
Alignment:
Q  21 tgctaaaattgaagtctatatttctcaaatgctaaaatttcagtctactttgtatgtgctac 82  Q
    ||||||||||  ||||| ||||| ||   ||||||||||||||||||||||| |||||||||    
T  43672648 tgctaaaatttcagtctctatttttccggtgctaaaatttcagtctactttgcatgtgctac 43672587  T

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