View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19584_low_9 (Length: 285)
Name: NF19584_low_9
Description: NF19584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19584_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 6416525 - 6416798
Alignment:
| Q |
1 |
aatatcccatgaacaattggacacaaatatatcagtattcaaactccttattacctcttgaaagtgtttgtctcttactactcggtctaacaacatatta |
100 |
Q |
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| T |
6416525 |
aatattccatgaacaattggacacaaatacatcagcattcaaactccttattacctcttgaaagtgtttgtctcttactgctcggcctaacaacatatta |
6416624 |
T |
|
| Q |
101 |
tagtaatagtgtttatcacatatcaatatttatgatcaacaagagacgtgaacaccacatctccgatcacaag-nnnnnnnaagggatcgcctatcacaa |
199 |
Q |
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| T |
6416625 |
tagcaatagtgactatcacatatcaatatttaggatcaacaagagacgtgaacaccatatctcctatcacaagttttttttaagggatcgcctatcacaa |
6416724 |
T |
|
| Q |
200 |
attcaagctctaccaagttgacctattattaatgatcataattaattcgattttctttggtattattactatat |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6416725 |
attcaagctctaccaagttgacctattattaatgatcataattaattcgattttctttggtattattactatat |
6416798 |
T |
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