View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19585_high_8 (Length: 366)
Name: NF19585_high_8
Description: NF19585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19585_high_8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 14 - 366
Target Start/End: Complemental strand, 11161913 - 11161558
Alignment:
| Q |
14 |
tcatgattatggtggatcattag---gctaacaaaattctatatagtagacatctttcattcccataaattcctatcttagtacttttgtcacagtttac |
110 |
Q |
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| T |
11161913 |
tcatgattatggtggatcattagcaggttaacaaaattctatatagtagacatctttcattcccataaattcctatcttagtacttttgtcacagtttac |
11161814 |
T |
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| Q |
111 |
cctacatgaaaccaataacgaatgatacgttaaatcatactaaccatcattttggacatcaacatatggttaagatgacacctgaagcagttggaataac |
210 |
Q |
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| T |
11161813 |
cctacatgaaaccaataacgaatgatacgttaaatcatactaaccatcattttggacatgaacatatggttaagatgacacctgaagcagttggaataac |
11161714 |
T |
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| Q |
211 |
tgttattccaaaaggttcataaaaaagcacgaaaacattatgtcaaattctttgaaacggagtcggcatccatggtcatcaacgaaatgcatccttagtt |
310 |
Q |
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| T |
11161713 |
tgttattccaaaaggttcataaaaaggcacgaaaacattatgtcaaattctttgaaacggagtcggcatccatggtcatcaacgaaatgcatccttagtt |
11161614 |
T |
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| Q |
311 |
aggagagaaaccggtaggacatgcctgaaattggaagtgaatatttgtttacacct |
366 |
Q |
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| T |
11161613 |
aggagagaaaccggtaggacatgcctgaaattggttgtgaacatttgtttacacct |
11161558 |
T |
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