View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19585_high_9 (Length: 359)

Name: NF19585_high_9
Description: NF19585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19585_high_9
NF19585_high_9
[»] chr4 (2 HSPs)
chr4 (17-347)||(13964785-13965099)
chr4 (21-57)||(9014869-9014905)
[»] chr7 (2 HSPs)
chr7 (17-59)||(7782636-7782678)
chr7 (21-57)||(5779512-5779548)
[»] chr6 (1 HSPs)
chr6 (21-116)||(22538119-22538214)
[»] chr2 (1 HSPs)
chr2 (17-55)||(5869474-5869512)
[»] chr5 (2 HSPs)
chr5 (87-148)||(26502105-26502166)
chr5 (21-108)||(23014595-23014682)
[»] chr3 (1 HSPs)
chr3 (17-62)||(21380581-21380626)
[»] chr8 (1 HSPs)
chr8 (87-119)||(14506954-14506986)
[»] chr1 (1 HSPs)
chr1 (100-148)||(10824897-10824945)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 13965099 - 13964785
Alignment:
Q  17 tttattttattttctgttttaaataagtaatgttagttgcctaatttgaactacaatccttatgattactacactcacttatcactttattacttcgtaa 116  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||    
T  13965099 tttattttattttctgtgttaaataagtaatgttagttgcctaatttgaactacaatccttgtggttacgacactcacttatcactttattacttcgtaa 13965000  T
Q  117 tgatttagtatatttaccgaaattgtccatcagcctttcctatcttttggcttgtcggaagnnnnnnntagaacaaaagaacaataaatgtgatcaaacc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||    
T  13964999 tgatttagtatatttaccgaaattgtccatcagcctttcctatcttttggcttgtcgg----------------aaaagaacaataaatgtgatcaaacc 13964916  T
Q  217 caaatttatgag-tatttttcaactgtgtgtctgtttgtgtctgggaaccaagtggttgagataaataattaataaacttaagttaaggatgaattgtaa 315  Q
    |||||||||||| |||||||||||||||||||||||||||| |  ||||||||||||||||||||||| |||||||||||||| |||||||||||| |||    
T  13964915 caaatttatgagatatttttcaactgtgtgtctgtttgtgtgtatgaaccaagtggttgagataaatagttaataaacttaag-taaggatgaattttaa 13964817  T
Q  316 ataataatccgaattgaaatcatgactagaat 347  Q
    ||||||||||||||||||||||||||||||||    
T  13964816 ataataatccgaattgaaatcatgactagaat 13964785  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 9014905 - 9014869
Alignment:
Q  21 ttttattttctgttttaaataagtaatgttagttgcc 57  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  9014905 ttttattttctgctttaaataagtaatgctagttgcc 9014869  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 7782678 - 7782636
Alignment:
Q  17 tttattttattttctgttttaaataagtaatgttagttgccta 59  Q
    |||||||||||||||| |||||||||||||||||| |||||||    
T  7782678 tttattttattttctgctttaaataagtaatgttaattgccta 7782636  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 5779548 - 5779512
Alignment:
Q  21 ttttattttctgttttaaataagtaatgttagttgcc 57  Q
    |||||||||||||||||||||||||| ||||||||||    
T  5779548 ttttattttctgttttaaataagtaacgttagttgcc 5779512  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 22538119 - 22538214
Alignment:
Q  21 ttttattttctgttttaaataagtaatgttagttgcctaatttgaactacaatccttatgattactacactcacttatcactttattacttcgtaa 116  Q
    |||||||||| ||||||||||| |||||  ||||||||  ||  ||| ||||| ||  ||| ||| | ||||||||||||||||||||||| ||||    
T  22538119 ttttattttccgttttaaataaataatgcaagttgccttgttgaaacgacaattctcgtgaatacgatactcacttatcactttattactttgtaa 22538214  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 5869512 - 5869474
Alignment:
Q  17 tttattttattttctgttttaaataagtaatgttagttg 55  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  5869512 tttattttattttctgttttaaataagtaacgatagttg 5869474  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 26502166 - 26502105
Alignment:
Q  87 acactcacttatcactttattacttcgtaatgatttagtatatttaccgaaattgtccatca 148  Q
    ||||||||||||||||||||||||| |||| | ||| ||| | ||  |||||||||||||||    
T  26502166 acactcacttatcactttattacttggtaacggtttggtagacttttcgaaattgtccatca 26502105  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 23014595 - 23014682
Alignment:
Q  21 ttttattttctgttttaaataagtaatgttagttgcctaatttgaactacaatccttatgattactacactc-acttatcactttatta 108  Q
    ||||||||| |||||||||||||||| || | ||||||| ||  ||| |||||||||| || ||| | |||| ||||||||||||||||    
T  23014595 ttttattttttgttttaaataagtaacgtgaattgcctagttgaaacgacaatccttagga-tacaatactctacttatcactttatta 23014682  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 21380581 - 21380626
Alignment:
Q  17 tttattttattttctgttttaaataagtaatgttagttgcctaatt 62  Q
    ||||||||||||||| ||||||||||||||   |||||||||||||    
T  21380581 tttattttattttctattttaaataagtaacactagttgcctaatt 21380626  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 14506954 - 14506986
Alignment:
Q  87 acactcacttatcactttattacttcgtaatga 119  Q
    ||||||||||||||||||||||||| |||||||    
T  14506954 acactcacttatcactttattacttggtaatga 14506986  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 10824945 - 10824897
Alignment:
Q  100 actttattacttcgtaatgatttagtatatttaccgaaattgtccatca 148  Q
    ||||||||||||   || |||||||||||||| ||||||||||||||||    
T  10824945 actttattacttgtgaacgatttagtatatttgccgaaattgtccatca 10824897  T

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