View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19585_low_1 (Length: 931)
Name: NF19585_low_1
Description: NF19585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19585_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 383 - 914
Target Start/End: Original strand, 28029876 - 28030406
Alignment:
| Q |
383 |
gacatgtttaaaactaatctttcagctgttcactatgtacagatctaattaaacattnnnnnnnggacagaaaatgagatcttaacttttacatgcctaa |
482 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28029876 |
gacatgtttaaaactaatctttcagctgttcactatgtacagatctaattaaacattaaaaaa-ggacagaaaatgagatcttaacttttacatgcctaa |
28029974 |
T |
|
| Q |
483 |
cagttagacaacaaatcatggcgacaaactggacaagtagtttttcctccaagtaaccacgagttgagacacgcagtatgaaattcatggccacacactc |
582 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28029975 |
tagttagacaacaaatcatggcgacaaactggacaagtagtttttcctccaagtaaccacgagttgagacacgcagtatgaaattcatggccacacactc |
28030074 |
T |
|
| Q |
583 |
caaaagattgaatcatctcgccttttgtgaattcatccatgcaaataggacagtcagtgtttttgtcaccatcaaagcttttaaccggcggcaatgctct |
682 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28030075 |
caaaagattgaatcatctcgccttttgtgaattcatccacgcaaataggacaatcagtgtttttgtcaccatcaaagcttttaaccggcggcaatgctct |
28030174 |
T |
|
| Q |
683 |
tattgcacacctagcaatctctgcaatcgtgccgaaagacatattgatctgctgtaaatcaactatgtaatgtcccctttccctcatagaccatgcatta |
782 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28030175 |
tattgcacacctagcaatctctgcaatcgtgccgaaagacatattgatctgctgtaaatcaactatgtaatgtcccctttccctcatagaccatgcatta |
28030274 |
T |
|
| Q |
783 |
tttctattttctctcatagacaatgcaatattattttgtgcaagagattcaaaaaattctctcctttcatataactgttgtatttggaccgtctcaacaa |
882 |
Q |
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| T |
28030275 |
tttctattttccctcatagacaatgcaatattattttgtgcaagagattcaaaaaattctctcctttcatataactgttgtatttggaccgtctcaacaa |
28030374 |
T |
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| Q |
883 |
aactattatccatttttccatattctctaaag |
914 |
Q |
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| T |
28030375 |
aactattatccatttttccatattctctaaag |
28030406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 186 - 354
Target Start/End: Original strand, 28029673 - 28029847
Alignment:
| Q |
186 |
ttcatcgtaatactataatacatacataaagtataatatttgtaccgataaataaatatggagtgaagttgaaacgtgaaagtccatgcaagttaggtat |
285 |
Q |
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| T |
28029673 |
ttcatcgtaatactataatacatacataaagtataatatttgtaccgataaataaatatggagtgaagttgaaacgtgaaagtccatgcaagttaggtat |
28029772 |
T |
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| Q |
286 |
atcagaatatgtacaacaataaatcttgaaga------gaaaattctcgacagagggatttcattaatcaaatag |
354 |
Q |
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| T |
28029773 |
atcagaatatgtacaacaataaatcttgaagagaaaatgaaaattctcgacagagggatttcattaatcaaatag |
28029847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 14 - 155
Target Start/End: Original strand, 28029533 - 28029678
Alignment:
| Q |
14 |
caaatagttgcctcacacacagccacataa--tctatt--atgaaattgccttataggtacaatcgtattattttctttggttaaccaaagttgtgagac |
109 |
Q |
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| T |
28029533 |
caaatagttgcctcacacacagccacatatagtctattttatgaaattgccttataggtacaatcgtattattttctttggttaaccaaagttgtgagac |
28029632 |
T |
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| Q |
110 |
tccatcgtaatttttcttatgacgttagttaaacggatttttcatc |
155 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28029633 |
tccatcataatttttcttatgacgttagttaaacggatttttcatc |
28029678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 493 - 634
Target Start/End: Original strand, 33142145 - 33142288
Alignment:
| Q |
493 |
acaaatcatggcgacaaactggacaagtagtttttcctccaagtaaccacgagttgagacacgcagtatgaaattcatggcca--cacactccaaaagat |
590 |
Q |
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||||||| || ||||||| ||||||||| |||||||||||||||||||| || ||||| || | | |||||||||||| || || || ||||||| | |
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| T |
33142145 |
acaaatcttgacgacaaattggacaagttgtttttcctccaagtaaccaagaattgaggcatgatgaatgaaattcatgagcacccaaaccccaaaaggt |
33142244 |
T |
|
| Q |
591 |
tgaatcatctcgccttttgtgaattcatccatgcaaataggaca |
634 |
Q |
| |
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| T |
33142245 |
tgaatcaactcccctttagtaaattcttccatgcaaataggaca |
33142288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 493 - 703
Target Start/End: Original strand, 33143337 - 33143538
Alignment:
| Q |
493 |
acaaatcatggcgacaaactggacaagtagtttttcctccaagtaaccacgagttgagacacgcagtatgaaattcatggccacacactccaaaagattg |
592 |
Q |
| |
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||||||| || || ||||| || ||||| |||||||| ||||||||||| || ||||| || | | |||||||||||| |||||| |||||| ||| |
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| T |
33143337 |
acaaatcttgacggcaaacggggcaagttgtttttcccccaagtaaccaagaattgaggcaagaggaatgaaattcatgaacacacaaatcaaaaggttg |
33143436 |
T |
|
| Q |
593 |
aatcatctcgccttttgtgaattcatccatgcaaataggacagtcagtgtttttgtcaccatcaaagcttttaaccggcggcaatgctcttattgcacac |
692 |
Q |
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||||| ||| ||||| | |||| ||||||||||||||||| ||| ||| ||| | || |||||||||||||||| |||||||| | ||| |
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| T |
33143437 |
aatcaactcccctttcttaaattgttccatgcaaataggacaatca---------tcaacattagaggttttaaccggcggcaacgctcttatcgtgcac |
33143527 |
T |
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| Q |
693 |
ctagcaatctc |
703 |
Q |
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||||||||||| |
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| T |
33143528 |
ctagcaatctc |
33143538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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