View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19585_low_14 (Length: 254)
Name: NF19585_low_14
Description: NF19585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19585_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 34 - 235
Target Start/End: Complemental strand, 18479664 - 18479462
Alignment:
| Q |
34 |
ataaggatcataaacaagtaagaatactaagaattcaataaagtggagaatataaaagaggacgtgcctacgtacaagaagactattaa-ttactcaaaa |
132 |
Q |
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| T |
18479664 |
ataaggatcataaacaagtaagaatactaagaattcaataaagtggagaatattaaagagcacgtgcctacgtacaagaagactattaaattactcaaaa |
18479565 |
T |
|
| Q |
133 |
aatgccaagctagcatcaaaattgtacattccatttccattgaagtccatgaaagtgtcaccattgaaagaatctccaaatgcatccaatgccaccctta |
232 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18479564 |
aatgccaagcttgcatcaaaattgtacattccatttccattgaagtccatgaaagtgtcaccattgaaagaatctccaaatgcatccaatgccaccatta |
18479465 |
T |
|
| Q |
233 |
gat |
235 |
Q |
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||| |
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| T |
18479464 |
gat |
18479462 |
T |
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