View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19585_low_4 (Length: 436)

Name: NF19585_low_4
Description: NF19585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19585_low_4
NF19585_low_4
[»] chr3 (17 HSPs)
chr3 (8-431)||(7032073-7032484)
chr3 (13-384)||(40930495-40930866)
chr3 (13-431)||(34332782-34333200)
chr3 (15-431)||(2364032-2364448)
chr3 (15-165)||(7312797-7312947)
chr3 (15-165)||(19920198-19920348)
chr3 (15-165)||(10323540-10323690)
chr3 (24-161)||(29523723-29523860)
chr3 (24-161)||(11203844-11203981)
chr3 (24-161)||(12342204-12342340)
chr3 (24-161)||(33496572-33496709)
chr3 (310-431)||(7312532-7312653)
chr3 (24-161)||(19890703-19890840)
chr3 (307-422)||(10323832-10323947)
chr3 (92-161)||(7031063-7031132)
chr3 (83-206)||(2755822-2755945)
chr3 (83-161)||(963200-963278)
[»] chr6 (15 HSPs)
chr6 (13-431)||(18651201-18651619)
chr6 (17-431)||(24767395-24767809)
chr6 (13-254)||(2553569-2553810)
chr6 (92-431)||(12733880-12734219)
chr6 (293-431)||(21167980-21168118)
chr6 (13-167)||(21168218-21168372)
chr6 (24-165)||(21630085-21630226)
chr6 (291-385)||(5734486-5734580)
chr6 (24-161)||(17606312-17606449)
chr6 (83-161)||(17579118-17579196)
chr6 (23-161)||(20883010-20883148)
chr6 (37-161)||(17573646-17573770)
chr6 (47-161)||(10577250-10577364)
chr6 (13-161)||(15958780-15958928)
chr6 (83-161)||(13937725-13937803)
[»] chr4 (17 HSPs)
chr4 (13-431)||(7403668-7404086)
chr4 (13-431)||(19755017-19755440)
chr4 (13-431)||(19784366-19784789)
chr4 (13-431)||(15739976-15740394)
chr4 (15-431)||(47685864-47686280)
chr4 (15-431)||(23642560-23642976)
chr4 (15-431)||(13270860-13271276)
chr4 (257-431)||(20788491-20788664)
chr4 (13-215)||(1828507-1828709)
chr4 (15-165)||(47418825-47418975)
chr4 (24-161)||(12697838-12697975)
chr4 (24-161)||(45472687-45472824)
chr4 (24-176)||(55725664-55725816)
chr4 (309-431)||(159954-160076)
chr4 (23-160)||(8361126-8361263)
chr4 (24-161)||(20002750-20002887)
chr4 (24-161)||(2822015-2822152)
[»] chr7 (8 HSPs)
chr7 (13-431)||(235404-235824)
chr7 (13-431)||(47876738-47877156)
chr7 (15-386)||(17720435-17720806)
chr7 (13-371)||(37919359-37919717)
chr7 (15-424)||(11277221-11277630)
chr7 (28-383)||(29967778-29968133)
chr7 (15-165)||(4938097-4938247)
chr7 (23-161)||(18532653-18532791)
[»] chr5 (23 HSPs)
chr5 (13-425)||(42927892-42928304)
chr5 (30-386)||(28535659-28536015)
chr5 (15-424)||(23238145-23238555)
chr5 (13-386)||(35983758-35984131)
chr5 (83-431)||(19255159-19255508)
chr5 (15-431)||(30732283-30732699)
chr5 (15-423)||(12824962-12825370)
chr5 (15-431)||(27117130-27117546)
chr5 (78-424)||(8227788-8228134)
chr5 (15-431)||(42513475-42513891)
chr5 (291-386)||(25824811-25824906)
chr5 (25-186)||(31641512-31641672)
chr5 (24-165)||(27767063-27767204)
chr5 (24-161)||(33385352-33385489)
chr5 (24-161)||(25857402-25857539)
chr5 (24-161)||(8300160-8300297)
chr5 (83-161)||(10776789-10776867)
chr5 (307-425)||(3418544-3418662)
chr5 (24-161)||(18359070-18359207)
chr5 (310-431)||(12820213-12820334)
chr5 (13-200)||(27795469-27795656)
chr5 (83-161)||(33169683-33169761)
chr5 (133-165)||(12820036-12820068)
[»] chr8 (18 HSPs)
chr8 (13-425)||(13396149-13396561)
chr8 (25-386)||(9922401-9922762)
chr8 (13-431)||(41665336-41665754)
chr8 (78-424)||(32266326-32266672)
chr8 (15-425)||(8299564-8299974)
chr8 (15-431)||(7924141-7924557)
chr8 (15-431)||(171858-172274)
chr8 (24-176)||(13200133-13200285)
chr8 (37-161)||(20824321-20824445)
chr8 (28-161)||(2170367-2170500)
chr8 (24-161)||(17699507-17699644)
chr8 (307-425)||(20496845-20496963)
chr8 (298-424)||(32567517-32567643)
chr8 (24-161)||(37434157-37434294)
chr8 (94-161)||(34137011-34137078)
chr8 (114-171)||(2529901-2529958)
chr8 (83-200)||(13879524-13879641)
chr8 (94-166)||(43270470-43270542)
[»] chr2 (5 HSPs)
chr2 (29-362)||(41206840-41207173)
chr2 (15-431)||(4551924-4552340)
chr2 (83-171)||(12645551-12645639)
chr2 (104-216)||(15917624-15917736)
chr2 (14-161)||(40176693-40176840)
[»] chr1 (12 HSPs)
chr1 (15-431)||(51052235-51052651)
chr1 (15-185)||(35541050-35541220)
chr1 (15-165)||(11909074-11909224)
chr1 (15-165)||(6050624-6050774)
chr1 (24-161)||(16917787-16917924)
chr1 (291-431)||(6259572-6259712)
chr1 (24-161)||(43388392-43388529)
chr1 (325-431)||(26059646-26059752)
chr1 (307-425)||(35540810-35540928)
chr1 (291-431)||(4842159-4842299)
chr1 (92-161)||(47623123-47623192)
chr1 (320-425)||(13352075-13352180)
[»] scaffold0472 (1 HSPs)
scaffold0472 (28-371)||(3067-3410)
[»] scaffold0034 (1 HSPs)
scaffold0034 (15-431)||(105812-106228)
[»] scaffold0369 (1 HSPs)
scaffold0369 (28-389)||(11187-11548)


Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 8 - 431
Target Start/End: Complemental strand, 7032484 - 7032073
Alignment:
Q  8 tggacggtgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||            ||||||||||||||||||||||||||||||    
T  7032484 tggacggtgggtattttgttcgtggagtctatgacatgctgacatcacaggagcagcc------------taatttggagttggtttggcacaaacaggt 7032397  T
Q  108 tcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcgg 207  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7032396 tcctctcaaaatttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaattgtggtcttttacctttggatgcgcgg 7032297  T
Q  208 tcgtgtgtctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcg 307  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7032296 tcgtgtgtctcaggttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcg 7032197  T
Q  308 gagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgat 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||    
T  7032196 gagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatctttttttcacttgat 7032097  T
Q  408 ttggttactttgtgtttctgtgtt 431  Q
    ||||||||||||||||||||||||    
T  7032096 ttggttactttgtgtttctgtgtt 7032073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 13 - 384
Target Start/End: Original strand, 40930495 - 40930866
Alignment:
Q  13 ggtgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctc 112  Q
    |||| ||||| ||| |||||||||||||||||||||||||||||||||||||| |   | | ||  ||  ||||||| ||||| || |||||||||||||    
T  40930495 ggtgtgtattctgtacgtggagtctatgacatgctgacatcacaggagcaacctcagttgcatcaaaacatggagttagtttgacataaacaggttcctc 40930594  T
Q  113 tcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtg 212  Q
    ||||||| ||||||||||| ||||||||| |||||||| |||||||||||||||| ||| |||| || ||||| |||||||||||||| ||||||| |||    
T  40930595 tcaaagtatctatccttgcttggcgacttttgagggattggttacctacaaaaaataatttggcaaaccgtggccttttacctttggaggcgcggttgtg 40930694  T
Q  213 tgtctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtg 312  Q
    ||| ||  |||| |||  |||||||||||| | ||||||||| |||   ||  | ||||| || || |||||| |   ||||||||||||||| ||||||    
T  40930695 tgtttctggttgtgggaacgtcgaagatgtcaatcatttgtttttgtcttgttcaacttttagtgccttatggccaatggtgcgggcatggcttggagtg 40930794  T
Q  313 gtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagaggg 384  Q
    || ||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||||| || |||||||||    
T  40930795 gtaggggtcgactctcaatcaacttcggatcattttttgcaatttattaattatgcaggttgttcgagaggg 40930866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 13 - 431
Target Start/End: Original strand, 34332782 - 34333200
Alignment:
Q  13 ggtgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctc 112  Q
    |||||||||| ||| ||||||| ||||||||||||||||||||||||||| ||||   | | || |||| |||||||  ||||||| |||||||||||||    
T  34332782 ggtgggtattatgtacgtggagcctatgacatgctgacatcacaggagcagccccagttacatcataatatggagttaatttggcataaacaggttcctc 34332881  T
Q  113 tcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtg 212  Q
    ||||||| ||||||||||| |||| ||||||||| ||||| |||||||||||||| ||| |||| || |||||  ||||||||||||| ||||||| |||    
T  34332882 tcaaagtatctatccttgcttggcaacttctgagagatcgattacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtg 34332981  T
Q  213 tgtctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtg 312  Q
    ||| ||  | || |||  ||| |||||||||| ||||||||| |||   ||    ||||| || || |||||| |   ||||||||||||||| ||||||    
T  34332982 tgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggccaatggtgcgggcatggctaggagtg 34333081  T
Q  313 gtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggt 412  Q
    || ||||||||||||||||| |||||  || |||| ||||||||||||||||| ||||| || ||||||||||| || ||       |||||||||||||    
T  34333082 gtaggggtcgactctcaatcaacttcaaatcattttttgcaatttattaattacgcaggttgttcgagagggcgacggtctttcttccacttgatttggt 34333181  T
Q  413 tactttgtgtttctgtgtt 431  Q
    | ||||||||||| |||||    
T  34333182 tgctttgtgtttcggtgtt 34333200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 431
Target Start/End: Complemental strand, 2364448 - 2364032
Alignment:
Q  15 tgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctc 114  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| |||||||| ||||||    
T  2364448 tgggtattctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctc 2364349  T
Q  115 aaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtg 214  Q
    ||||| ||||||||||| |||||||| ||||||||||||||||||||||||   ||| |||| ||||||||  || || || |||| | |||||  || |    
T  2364348 aaagtatctatccttgcttggcgactactgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcg 2364249  T
Q  215 tctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggt 314  Q
    |  |  | || |||   ||||||||||||||||||||||| |||   ||  | |||||  | || |||||| |   |||||||   ||| | ||||||||    
T  2364248 ttgctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggt 2364149  T
Q  315 gggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggtta 414  Q
     || |||||||||||||| ||||| ||| | ||  ||||||||||| |||||||||| || ||||||||||| || ||       ||||||||||| ||     
T  2364148 aggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttgatttgattg 2364049  T
Q  415 ctttgtgtttctgtgtt 431  Q
    ||||||||||| |||||    
T  2364048 ctttgtgtttcggtgtt 2364032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 15 - 165
Target Start/End: Complemental strand, 7312947 - 7312797
Alignment:
Q  15 tgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctc 114  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| |||||||| ||||||    
T  7312947 tgggtattctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtacctctc 7312848  T
Q  115 aaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaa 165  Q
    ||||| ||||||||||| ||||||||  |||||||||||||||||||||||    
T  7312847 aaagtatctatccttgcttggcgactaatgagggatcggttacctacaaaa 7312797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 15 - 165
Target Start/End: Original strand, 19920198 - 19920348
Alignment:
Q  15 tgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctc 114  Q
    |||||||| ||| |||||||||||||||||| |||||||||||||| | ||||   | |  | | || |||| ||  ||||||| |||||||||||||||    
T  19920198 tgggtattctgtacgtggagtctatgacatgttgacatcacaggagaagccccagttacaccatcatatggacttaatttggcataaacaggttcctctc 19920297  T
Q  115 aaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaa 165  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  19920298 aaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaa 19920348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 15 - 165
Target Start/End: Original strand, 10323540 - 10323690
Alignment:
Q  15 tgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctc 114  Q
    ||||||||  || |||||||||||||| |||||||||||||||||||| ||||   | |  | || | |||| ||  ||||||| |||||||| ||||||    
T  10323540 tgggtattcagtacgtggagtctatgatatgctgacatcacaggagcagccccagttacaccatagtatggacttaatttggcataaacaggtccctctc 10323639  T
Q  115 aaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaa 165  Q
    ||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  10323640 aaagtatctatccttgcttggcgactactgagggatcggttacctacaaaa 10323690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 29523723 - 29523860
Alignment:
Q  24 tgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttct 123  Q
    ||||||||| || |||||| || ||||||||||||| ||||| | | ||| ||  ||| |||||||  ||||||| |||||||||||| | |||||||||    
T  29523723 tgttcgtggtgtatatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttct 29523822  T
Q  124 atccttgcatggcgacttctgagggatcggttacctac 161  Q
    |||||||| ||||||||  |||||||||| ||||||||    
T  29523823 atccttgcttggcgactgttgagggatcgtttacctac 29523860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 11203981 - 11203844
Alignment:
Q  24 tgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttct 123  Q
    ||||||||| || |||||  || ||||||||||||| ||||| | | ||| ||  ||| |||||||  ||||||| |||||||||||| | |||||||||    
T  11203981 tgttcgtggtgtatatgatttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttct 11203882  T
Q  124 atccttgcatggcgacttctgagggatcggttacctac 161  Q
    || ||||| ||||||||  |||||||||| ||||||||    
T  11203881 atacttgcttggcgactgttgagggatcgtttacctac 11203844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 12342204 - 12342340
Alignment:
Q  24 tgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttct 123  Q
    ||||| ||| || |||||| || ||||||||||||| ||||| | | ||| ||  ||| |||||||  ||||||| |||||||||| | | |||||||||    
T  12342204 tgttcatggtgtatatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttctt-taaaagtttct 12342302  T
Q  124 atccttgcatggcgacttctgagggatcggttacctac 161  Q
    |||||||| ||||||||  |||||||||| ||||||||    
T  12342303 atccttgcttggcgactgttgagggatcgtttacctac 12342340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 33496709 - 33496572
Alignment:
Q  24 tgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttct 123  Q
    ||||| ||| || |||||| || ||||||||||||| ||||| | | ||| ||   || |||||||  ||||||| |||||||||||| | |||||||||    
T  33496709 tgttcatggtgtatatgacttgttgacatcacaggaacaacctcatgttcatcaatatatggagttaatttggcataaacaggttcctttaaaagtttct 33496610  T
Q  124 atccttgcatggcgacttctgagggatcggttacctac 161  Q
    ||| |||| ||||||||  |||||||||| ||||||||    
T  33496609 atcattgcttggcgactgttgagggatcgtttacctac 33496572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 431
Target Start/End: Complemental strand, 7312653 - 7312532
Alignment:
Q  310 gtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgattt 409  Q
    ||||| || |||||||||| ||| ||||| ||| ||||   |||||||||| |||||||||| || ||||||||||| |||||       ||||||||||    
T  7312653 gtggtaggtgtcgactctcgatcaacttcagatcattttgagcaatttatttattatgcaggttgttcgagagggcgacgatctttcttgcacttgattt 7312554  T
Q  410 ggttactttgtgtttctgtgtt 431  Q
    |||| ||||||||||| |||||    
T  7312553 ggttgctttgtgtttcagtgtt 7312532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 19890840 - 19890703
Alignment:
Q  24 tgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttct 123  Q
    ||||||||| || ||||||||| |||||||||||||  |||| | | ||| ||  ||| |||||||  | ||||| |||||||||||| | ||||||||     
T  19890840 tgttcgtggtgtatatgacatgttgacatcacaggaataacctcatgttcatcaaaatatggagttaatctggcataaacaggttcctttaaaagtttcc 19890741  T
Q  124 atccttgcatggcgacttctgagggatcggttacctac 161  Q
    |||||||||| |||  |  |||||||||| ||||||||    
T  19890740 atccttgcattgcggttgttgagggatcgattacctac 19890703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 422
Target Start/End: Original strand, 10323832 - 10323947
Alignment:
Q  307 ggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttga 406  Q
    |||||||| || |||||||||||||| ||||||||| | ||  ||||||||||  | |||||||| || ||||||||||| || ||       |||||||    
T  10323832 ggagtggtaggtgtcgactctcaatcaacttctgatcactttgtgcaatttatacaatatgcaggttgttcgagagggcgacggtctttcttccacttga 10323931  T
Q  407 tttggttactttgtgt 422  Q
    ||||||| ||||||||    
T  10323932 tttggttgctttgtgt 10323947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 7031063 - 7031132
Alignment:
Q  92 tttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctac 161  Q
    ||||||| |||||||||||| | ||| ||||||||||||| ||||| ||  |||||||||| ||||||||    
T  7031063 tttggcataaacaggttcctttaaaactttctatccttgcttggcgtctgttgagggatcgcttacctac 7031132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 206
Target Start/End: Complemental strand, 2755945 - 2755822
Alignment:
Q  83 tggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcg 182  Q
    |||||||| |||||||||||||||| ||| | ||||| |||||  |||| |||||  | |||||||| ||||||||||| ||| | ||| |||| | |||    
T  2755945 tggagttgatttggcacaaacaggtacctttgaaagtgtctatatttgcttggcgtttgctgagggaccggttacctactaaataaaatttggcaagtcg 2755846  T
Q  183 tggtcttttacctttggatgcgcg 206  Q
    |||  | ||| ||||||| |||||    
T  2755845 tggggtcttatctttggaggcgcg 2755822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 161
Target Start/End: Original strand, 963200 - 963278
Alignment:
Q  83 tggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctac 161  Q
    |||||||| |||||||||||||||| ||| | ||||| |||||  |||| |||||  | |||||||| |||||||||||    
T  963200 tggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctac 963278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 182; Significance: 3e-98; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 13 - 431
Target Start/End: Original strand, 18651201 - 18651619
Alignment:
Q  13 ggtgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctc 112  Q
    |||||||||| ||| | ||||||||||||||||||||||||||||||||| ||||   |   ||  ||| |||||||  ||||||| |||||||||||||    
T  18651201 ggtgggtattctgtacatggagtctatgacatgctgacatcacaggagcagccccagttagatcaaaatatggagttaatttggcataaacaggttcctc 18651300  T
Q  113 tcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtg 212  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||  || |||||  ||||||||||||||||||||| |||    
T  18651301 tcaaagtctctatccttgcttggcgacttctgagggatcggttacctacaaaaaataatttggaaaaccgtgggattttacctttggatgcgcggttgtg 18651400  T
Q  213 tgtctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtg 312  Q
    ||||||  | |||||| |||| |||||||| | ||| |||||||| ||||| || ||||| ||||| |||| | |   |||||| |||||||| ||||||    
T  18651401 tgtctctggatgcgggaccgttgaagatgtcaatcacttgttctttgtgtgtccaacttttagcgccttattgccattggtgcgagcatggctaggagtg 18651500  T
Q  313 gtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggt 412  Q
    || ||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| || ||||||||||| |||||       |||||||||||||    
T  18651501 gtcggggtcgactctcaatcaacttcagatcatttgttgcaatttattaattatgcaggttgttcgagagggcgacgatctttttttcacttgatttggt 18651600  T
Q  413 tactttgtgtttctgtgtt 431  Q
    ||||||||||||| |||||    
T  18651601 tactttgtgtttcagtgtt 18651619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 17 - 431
Target Start/End: Original strand, 24767395 - 24767809
Alignment:
Q  17 ggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaa 116  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||| |||    | | ||  ||| |||||||  ||| ||| |||||||||||| ||||    
T  24767395 ggtattctgtacgtggagtctatgacatgctgacatcacaggagcagccctagttacatcaaaatatggagttaattttgcataaacaggttcctatcaa 24767494  T
Q  117 agtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtc 216  Q
    ||| ||||||||||| || |||||||| ||||||||||||||||||||||| ||| |||| ||||||||  ||||||||||||| ||||||| ||||||     
T  24767495 agtctctatccttgcttgacgacttcttagggatcggttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtt 24767594  T
Q  217 tcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgg 316  Q
    |   ||||||||  ||| |||||||||| | ||||||| |||   || || ||||| || || |||||  |   |||||||||||||||||||||||| |    
T  24767595 tttggttgcgggaacgttgaagatgttaataatttgtttttgtcttgtccaacttttagtgccttatgaccattggtgcgggcatggctcggagtggtag 24767694  T
Q  317 gggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggttact 416  Q
    |||||||||||||||| ||||| ||| |||| ||||||||||||||||||||||| || ||||||||||| |  ||       |||||||||||||| ||    
T  24767695 gggtcgactctcaatcaacttcagatcattttttgcaatttattaattatgcaggttgttcgagagggcgacattcttttttccacttgatttggttgct 24767794  T
Q  417 ttgtgtttctgtgtt 431  Q
    ||||||||| |||||    
T  24767795 ttgtgtttcggtgtt 24767809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 2553810 - 2553569
Alignment:
Q  13 ggtgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctc 112  Q
    |||||||||| ||| |||||||||||||| |||||||||||||| ||||| ||||   | |  | |||| |||||||  ||||||| |||||||||||||    
T  2553810 ggtgggtattctgtacgtggagtctatgatatgctgacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctc 2553711  T
Q  113 tcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtg 212  Q
    ||||||| ||||||||||| ||||||||| |||  |||||||||||||||||||| ||| |||| || |||||  ||||||||||||| |||| || |||    
T  2553710 tcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtg 2553611  T
Q  213 tgtctcaagttgcggggccgtcgaagatgttactcatttgtt 254  Q
    ||| ||  | || |||  ||| |||||||||| |||||||||    
T  2553610 tgtttctggatgtgggaacgttgaagatgttaatcatttgtt 2553569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 92 - 431
Target Start/End: Complemental strand, 12734219 - 12733880
Alignment:
Q  92 tttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtctttt 191  Q
    ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||   ||| |||  |  |||||  || |    
T  12734219 tttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggtaacccgtggcattct 12734120  T
Q  192 acctttggatgcgcggtcgtgtgtctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcg 291  Q
    | || |||| | |||||  ||||| || || || |||   |||||||||||| |||||||||| |||   ||  | |||||  | || |||||| |   |    
T  12734119 atctctggaggagcggttatgtgtttctagatgtgggaatgtcgaagatgtttctcatttgtttttgtcttgtgcaacttttggagcattatggccgatg 12734020  T
Q  292 gtgcgggcatggctcggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgat 391  Q
    |||| ||  ||| | |||||||| ||||||||||||||||| ||||| ||| ||||  ||||||||||||||||||| || || ||||||||||| || |    
T  12734019 gtgcaggattggttaggagtggtaggggtcgactctcaatcaacttcagatcattttgtgcaatttattaattatgccggttgttcgagagggcgacggt 12733920  T
Q  392 cnnnnnnncacttgatttggttactttgtgtttctgtgtt 431  Q
    |       |||||||||||||| ||||||||||| |||||    
T  12733919 ctttcttccacttgatttggttgctttgtgtttcggtgtt 12733880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 293 - 431
Target Start/End: Complemental strand, 21168118 - 21167980
Alignment:
Q  293 tgcgggcatggctcggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatc 392  Q
    |||| |||||||| ||||||||||||||||| |||||||| ||||| ||| |||| ||||||||||||||||| ||||| || ||||||||| | || ||    
T  21168118 tgcgagcatggctaggagtggtgggggtcgattctcaatcaacttcagatcattttttgcaatttattaattacgcaggttgttcgagagggagacggtc 21168019  T
Q  393 nnnnnnncacttgatttggttactttgtgtttctgtgtt 431  Q
           |||||||||||||| ||||||||||| |||||    
T  21168018 tttcttccacttgatttggttgctttgtgtttcggtgtt 21167980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 167
Target Start/End: Complemental strand, 21168372 - 21168218
Alignment:
Q  13 ggtgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctc 112  Q
    |||||||||| ||| |||||||||||||| ||| |||||||||||||||| ||||   | |  | |||| |||||||  ||||||| ||| |||||||||    
T  21168372 ggtgggtattctgtacgtggagtctatgatatgttgacatcacaggagcagccccagttacaccataatatggagttaatttggcataaataggttcctc 21168273  T
Q  113 tcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaa 167  Q
    ||||||| |||||||| || ||| ||||| ||   ||||| ||||||||||||||    
T  21168272 tcaaagtatctatcctagcttggagacttttgcaagatcgattacctacaaaaaa 21168218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 21630085 - 21630226
Alignment:
Q  24 tgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttct 123  Q
    ||||||||| || |||||| || ||||||||||||| ||||| | | ||| ||  ||| |||||||  ||||||| || ||||||||| | |||||||||    
T  21630085 tgttcgtggtgtatatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaccaggttcctttaaaagtttct 21630184  T
Q  124 atccttgcatggcgacttctgagggatcggttacctacaaaa 165  Q
    |||||||  ||||||||  |||||||||| ||||||||||||    
T  21630185 atccttgtttggcgactattgagggatcgtttacctacaaaa 21630226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 291 - 385
Target Start/End: Original strand, 5734486 - 5734580
Alignment:
Q  291 ggtgcgggcatggctcggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggc 385  Q
    |||||| |||||||| ||||||||  |||| ||||||||||| ||||| ||| ||||  |||||||||||||||||||||| || ||||||||||    
T  5734486 ggtgcgagcatggcttggagtggtaagggttgactctcaatcaacttcagatcattttgtgcaatttattaattatgcaggttgttcgagagggc 5734580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 17606312 - 17606449
Alignment:
Q  24 tgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttct 123  Q
    ||||||||| || |||||| || ||||||||||||| ||| | | | ||| ||  ||| |||||||  ||||||| |||||||||||| | |||||||||    
T  17606312 tgttcgtggtgtatatgacttgttgacatcacaggaacaatctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttct 17606411  T
Q  124 atccttgcatggcgacttctgagggatcggttacctac 161  Q
    |||||||| ||||||||  |||||||||  ||||||||    
T  17606412 atccttgcttggcgactgttgagggatcatttacctac 17606449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 83 - 161
Target Start/End: Original strand, 17579118 - 17579196
Alignment:
Q  83 tggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctac 161  Q
    |||||||  ||||||| |||||||||||| | ||||||||||||||||| ||||||||  |||||||||| ||||||||    
T  17579118 tggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctac 17579196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 161
Target Start/End: Original strand, 20883010 - 20883148
Alignment:
Q  23 ttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttc 122  Q
    |||||||||| || ||||||||| ||||||||||||| ||||| | | ||| ||  ||| |||||||  | ||||| ||| |||||||| | ||||||||    
T  20883010 ttgttcgtggtgtatatgacatgttgacatcacaggaacaaccacatgttcatcaaaatatggagttaatctggcataaataggttcctttaaaagtttc 20883109  T
Q  123 tatccttgcatggcgacttctgagggatcggttacctac 161  Q
    ||||||||| ||||| ||  |||||||| | ||||||||    
T  20883110 tatccttgcttggcggctgttgagggattgtttacctac 20883148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 161
Target Start/End: Original strand, 17573646 - 17573770
Alignment:
Q  37 tatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggc 136  Q
    |||||| || ||||||||||||| ||||| | | ||  ||  ||| |||||||  ||||||| |||||||||||| | |||| |||||||||||| ||||    
T  17573646 tatgacttgttgacatcacaggaacaacctcatgtttatcaaaatatggagttaatttggcataaacaggttcctttaaaagattctatccttgcttggc 17573745  T
Q  137 gacttctgagggatcggttacctac 161  Q
    ||||  |||||||||| ||||||||    
T  17573746 gactgttgagggatcgcttacctac 17573770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 10577250 - 10577364
Alignment:
Q  47 tgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgag 146  Q
    ||||||||||||| ||||| | | ||| ||  ||| | |||||  ||||||| |||||||||||| | ||||||| ||||||||| ||||||||  ||||    
T  10577250 tgacatcacaggaacaacctcatgttcatcaaaatatagagttaatttggcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgag 10577349  T
Q  147 ggatcggttacctac 161  Q
    |||||| ||||||||    
T  10577350 ggatcgtttacctac 10577364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 15958780 - 15958928
Alignment:
Q  13 ggtgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctc 112  Q
    ||||||||||  ||||| || || | ||||||||||||||||||||| ||||  |   | | ||| ||| || ||||  | ||||| |||||||||||||    
T  15958780 ggtgggtattcagttcgcggtgtgtctgacatgctgacatcacaggaacaacttcagttacatccaaatatgaagttaatatggcataaacaggttcctc 15958879  T
Q  113 tcaaagtttctatccttgcatggcgacttctgagggatcggttacctac 161  Q
    | ||||| ||||| ||||| ||||| ||| |||||||||  ||||||||    
T  15958880 ttaaagtctctattcttgcttggcggcttttgagggatcatttacctac 15958928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 161
Target Start/End: Complemental strand, 13937803 - 13937725
Alignment:
Q  83 tggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctac 161  Q
    |||||||| |||||||||||||||| ||| | ||||| |||||  |||| |||||  | |||||||| |||||||||||    
T  13937803 tggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctac 13937725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 150; Significance: 4e-79; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 13 - 431
Target Start/End: Complemental strand, 7404086 - 7403668
Alignment:
Q  13 ggtgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctc 112  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||   | | ||  ||| || ||||  ||||||| ||||| |||| |     
T  7404086 ggtgggtattctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacatcaaaatatgaagttaatttggcataaacaagttcatt 7403987  T
Q  113 tcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtg 212  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| || |||||  |||||| |||||| ||||||| |||    
T  7403986 tcaaagtctctatccttgcttggcgacttctgagggatcggttacctacaaaaaagaatttggcaaaccgtggcattttacgtttggaggcgcggttgtg 7403887  T
Q  213 tgtctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtg 312  Q
    ||||||  | ||||||  ||| |||||||| | ||||||||| |||   || || ||||| || || |||||| |   |||| |||||||||||||||||    
T  7403886 tgtctctggatgcgggaacgttgaagatgtcaatcatttgtttttgtcttgtccaacttttagtgccttatggccattggtgtgggcatggctcggagtg 7403787  T
Q  313 gtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggt 412  Q
    || ||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||||| || ||||||||||| || ||       |||||||||||||    
T  7403786 gtaggggtcgactctcaatcaacttcagatcattttttgcaatttattaattatgcaggttgttcgagagggcgacgttcttttttccacttgatttggt 7403687  T
Q  413 tactttgtgtttctgtgtt 431  Q
    | ||||||||||| |||||    
T  7403686 tgctttgtgtttcggtgtt 7403668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 13 - 431
Target Start/End: Complemental strand, 19755440 - 19755017
Alignment:
Q  13 ggtgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctc 112  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||| ||||| ||||   ||| || | || |||||||  ||||||| |||||||||||||    
T  19755440 ggtgggtattctgtacgtggggtctatgacatgctgacatcacaagagcagccccaatttcatcatcatatggagttaatttggcataaacaggttcctc 19755341  T
Q  113 tcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtg---gtcttttacctttggatgcgcggtc 209  Q
    ||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||| ||| |||| || ||||    | | ||||||||||| |||||||     
T  19755340 tcaaagtatctatccttgcttggcgactcctgagagatcggttacctacaaaaaataatttggcaaaccgtgacattttattacctttggaggcgcggtt 19755241  T
Q  210 gtgtgtctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcgga 309  Q
    |||||| ||  | || |||  ||| |||||||||| ||||||||| |||   ||    ||||| || || ||||||||   ||||||||||||||| |||    
T  19755240 gtgtgtttctggatgtgggagcgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggtcaatggtgcgggcatggctagga 19755141  T
Q  310 gtgg--tgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgat 407  Q
    ||||  | |||||||| |||||||| ||||| ||| |||  ||||||||||||||||| ||||| || | |||| |||| || ||       ||||||||    
T  19755140 gtggtataggggtcgaatctcaatcaacttcagatcattgtttgcaatttattaattacgcaggttgtttgagaaggcgacggtctttcttccacttgat 19755041  T
Q  408 ttggttactttgtgtttctgtgtt 431  Q
    |||||| ||||||||||| |||||    
T  19755040 ttggttgctttgtgtttcggtgtt 19755017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 13 - 431
Target Start/End: Original strand, 19784366 - 19784789
Alignment:
Q  13 ggtgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctc 112  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||| ||||| ||||   ||| || | || |||||||  ||||||| |||||||||||||    
T  19784366 ggtgggtattctgtacgtggggtctatgacatgctgacatcacaagagcagccccaatttcatcatcatatggagttaatttggcataaacaggttcctc 19784465  T
Q  113 tcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtg---gtcttttacctttggatgcgcggtc 209  Q
    ||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||| ||| |||| || ||||    | | ||||||||||| |||||||     
T  19784466 tcaaagtatctatccttgcttggcgactcctgagagatcggttacctacaaaaaataatttggcaaaccgtgacattttattacctttggaggcgcggtt 19784565  T
Q  210 gtgtgtctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcgga 309  Q
    |||||| ||  | || |||  ||| |||||||||| ||||||||| |||   ||    ||||| || || ||||||||   ||||||||||||||| |||    
T  19784566 gtgtgtttctggatgtgggagcgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggtcaatggtgcgggcatggctagga 19784665  T
Q  310 gtgg--tgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgat 407  Q
    ||||  | |||||||| |||||||| ||||| ||| |||  ||||||||||||||||| ||||| || | |||| |||| || ||       ||||||||    
T  19784666 gtggtataggggtcgaatctcaatcaacttcagatcattgtttgcaatttattaattacgcaggttgtttgagaaggcgacggtctttcttccacttgat 19784765  T
Q  408 ttggttactttgtgtttctgtgtt 431  Q
    |||||| ||||||||||| |||||    
T  19784766 ttggttgctttgtgtttcggtgtt 19784789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 13 - 431
Target Start/End: Complemental strand, 15740394 - 15739976
Alignment:
Q  13 ggtgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctc 112  Q
    |||||||||| ||| |||||||||||||| ||| |||||||| ||||||| ||||   | |  | |||| |||||||  ||||||| |||||||||||||    
T  15740394 ggtgggtattctgtacgtggagtctatgatatgttgacatcataggagcagccccagttacaccataatatggagttaatttggcataaacaggttcctc 15740295  T
Q  113 tcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtg 212  Q
    ||||||| ||||||||||| ||| ||||| || | |||||||||||||||||||| ||| || | |  |||||  ||||||||||||| ||||||| |||    
T  15740294 tcaaagtatctatccttgcttggagacttttgcgagatcggttacctacaaaaaataatttgacaagccgtggcattttacctttggaggcgcggttgtg 15740195  T
Q  213 tgtctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtg 312  Q
    ||| ||  | || |||   ||  ||||||||| ||||||||| |||   || |  |||||  | || |||||| |   |||||| |||||||| ||||||    
T  15740194 tgtttctgggtgtgggaatgttaaagatgttaatcatttgtttttgtcttgtctaacttttggtgccttatggccattggtgcgagcatggctaggagtg 15740095  T
Q  313 gtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggt 412  Q
    || |||||||| |||||||| ||||| ||| |||| ||||||||||||||||| ||||| || ||||||||| | || ||       |||||||||||||    
T  15740094 gtaggggtcgattctcaatcaacttcagatcattttttgcaatttattaattacgcaggttgttcgagagggagacggtctttcttccacttgatttggt 15739995  T
Q  413 tactttgtgtttctgtgtt 431  Q
    | ||||||||||| |||||    
T  15739994 tgctttgtgtttcggtgtt 15739976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 431
Target Start/End: Original strand, 47685864 - 47686280
Alignment:
Q  15 tgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctc 114  Q
    |||||||| ||||||||||||||| ||||||||||||||||| ||||| |||    | |  | |||| |||| ||  |||| || |||||||||||||||    
T  47685864 tgggtattctgttcgtggagtctacgacatgctgacatcacaagagcagcccaagttacaccataatctggacttaatttgacataaacaggttcctctc 47685963  T
Q  115 aaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtg 214  Q
    ||||| ||||||||||| ||||||||| |||| |||||||||||||||||| | ||| |||| || |||||  ||||| || |||| | |||||  ||||    
T  47685964 aaagtatctatccttgcttggcgacttttgagagatcggttacctacaaaacataatttggcaaaccgtggcattttatctgtggaggagcggttatgtg 47686063  T
Q  215 tctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggt 314  Q
    | ||  | || |||   |||||||||||| ||| |||||| |||   ||  | ||||| || || |||||| |   ||||||||  ||| | ||||||||    
T  47686064 tttctggatgtgggaatgtcgaagatgtttctcgtttgtttttgtcttgtgcaacttttagtgcattatggccgatggtgcgggattggttaggagtggt 47686163  T
Q  315 gggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggtta 414  Q
     ||||||||||||||||| ||||| ||| ||||| |||||||||||||||||||||| || || |||||| | || ||       ||||||||||||||     
T  47686164 aggggtcgactctcaatcaacttcagatcatttggtgcaatttattaattatgcaggttgttcaagagggtgacggtctttctttcacttgatttggttg 47686263  T
Q  415 ctttgtgtttctgtgtt 431  Q
    ||||||||||| |||||    
T  47686264 ctttgtgtttcagtgtt 47686280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 431
Target Start/End: Original strand, 23642560 - 23642976
Alignment:
Q  15 tgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctc 114  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| |||||||| ||||||    
T  23642560 tgggtattctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctc 23642659  T
Q  115 aaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtg 214  Q
    ||||| ||||||||||| ||||||||  |||||||||||||||||||||||   ||| |||| ||||||||  || || || |||| | |||||  || |    
T  23642660 aaagtctctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcg 23642759  T
Q  215 tctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggt 314  Q
    |  |  | || |||   ||||||||||||||||||||||| |||   ||  | |||||  | || |||||| |   |||||||   ||| | ||||||||    
T  23642760 ttgctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggt 23642859  T
Q  315 gggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggtta 414  Q
     || |||||||||||||| ||||| ||| | ||  ||||||||||| |||||||||| || ||||||||||| || ||       ||||||||||||||     
T  23642860 aggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttg 23642959  T
Q  415 ctttgtgtttctgtgtt 431  Q
    ||||||||||| |||||    
T  23642960 ctttgtgtttcggtgtt 23642976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 431
Target Start/End: Original strand, 13270860 - 13271276
Alignment:
Q  15 tgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctc 114  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| |||||||| ||||||    
T  13270860 tgggtattctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctc 13270959  T
Q  115 aaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtg 214  Q
    ||||| ||||||||||| ||||||||  |||||||||||||||||||||||   ||| |||| ||||||||  || || || |||| | |||||  || |    
T  13270960 aaagtctctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgag 13271059  T
Q  215 tctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggt 314  Q
    |  |  | || |||   ||||||||||||||| |||| || |||   ||  | |||||  | || |||||| |   |||||||   ||| | ||||||||    
T  13271060 ttactggatgtgggattgtcgaagatgttactaatttatttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggt 13271159  T
Q  315 gggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggtta 414  Q
     || |||||||||||||| ||||| ||| | ||  ||||||||||| |||||||||| || ||||||||||| || ||       ||||||||||||||     
T  13271160 aggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttg 13271259  T
Q  415 ctttgtgtttctgtgtt 431  Q
    ||||||||||| |||||    
T  13271260 ctttgtgtttcggtgtt 13271276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 257 - 431
Target Start/End: Original strand, 20788491 - 20788664
Alignment:
Q  257 tggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatt 356  Q
    ||||||| || ||||| ||||| |||||| |   |||||| |||||||| |||||||| ||||||||||||||||| ||||| ||| |||||||||||||    
T  20788491 tggtgtgtccaacttttagcgccttatggccattggtgcgagcatggctaggagtggtcggggtcgactctcaatcaacttcagatcatttgttgcaatt 20788590  T
Q  357 tattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggttactttgtgtttctgtgtt 431  Q
    ||||||||||| ||| || ||||||||||  |||||       |||||||||||||||||||||||||| |||||    
T  20788591 tattaattatgtaggttgttcgagagggcaacgatc-ttttttcacttgatttggttactttgtgtttcggtgtt 20788664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 215
Target Start/End: Original strand, 1828507 - 1828709
Alignment:
Q  13 ggtgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctc 112  Q
    ||||||||||  || ||||||| |||||| ||| |||||||||||||||| ||||   | | || |||| |||||||  ||||||| |||||||||||||    
T  1828507 ggtgggtattccgtacgtggagcctatgatatgttgacatcacaggagcagccccagttacatcataatatggagttaatttggcataaacaggttcctc 1828606  T
Q  113 tcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtg 212  Q
    ||||||| ||||||||||| ||| ||||  || | ||| |||||||||||||||  ||| |||| || |||||  ||||||||||||| ||||||| |||    
T  1828607 tcaaagtatctatccttgcttggagactattgcgagataggttacctacaaaaactaatttggcaaaccgtggcattttacctttggaggcgcggttgtg 1828706  T
Q  213 tgt 215  Q
    |||    
T  1828707 tgt 1828709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 15 - 165
Target Start/End: Complemental strand, 47418975 - 47418825
Alignment:
Q  15 tgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctc 114  Q
    ||||||||  || |||||||||||||| |||||||||||||||||||| ||||   | |  | || | |||| ||  ||||||| |||||||| ||||||    
T  47418975 tgggtattcagtacgtggagtctatgatatgctgacatcacaggagcagccccagttacaccatagtatggacttaatttggcataaacaggtccctctc 47418876  T
Q  115 aaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaa 165  Q
    ||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  47418875 aaagtatctatccttgcttggcgactactgagggatcggttacctacaaaa 47418825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 12697975 - 12697838
Alignment:
Q  24 tgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttct 123  Q
    ||||||||| || |||||| || ||||||||||||| ||||| | | ||| ||  ||| || | ||  ||||||| |||||||||||| | |||||||||    
T  12697975 tgttcgtggtgtatatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatgaaattaatttggcataaacaggttcctttaaaagtttct 12697876  T
Q  124 atccttgcatggcgacttctgagggatcggttacctac 161  Q
    |||||||| ||||||||  |||||||||| ||||||||    
T  12697875 atccttgcttggcgactgttgagggatcgtttacctac 12697838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 45472687 - 45472824
Alignment:
Q  24 tgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttct 123  Q
    ||||||||| || |||||| || ||||||||||||| | ||| | | ||| ||  ||| |||||||  ||||||| |||||||||||| | |||||||||    
T  45472687 tgttcgtggtgtatatgacttgttgacatcacaggaaccacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttct 45472786  T
Q  124 atccttgcatggcgacttctgagggatcggttacctac 161  Q
    |||||||  ||||||||  |||||||||| ||||||||    
T  45472787 atccttgtttggcgactgttgagggatcgtttacctac 45472824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 176
Target Start/End: Original strand, 55725664 - 55725816
Alignment:
Q  24 tgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttct 123  Q
    ||||| ||| || ||||| ||| ||||||||||||| ||||| | | ||  ||  ||| |||||||  ||||||| ||||| |||||||| ||||||||     
T  55725664 tgttcatggtgtgtatgatatgttgacatcacaggaacaacctcatgtttatcaaaatatggagttaatttggcataaacaagttcctctaaaagtttca 55725763  T
Q  124 atccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggc 176  Q
    |||||||| ||||| ||  |||||||||| |||||||||||| ||||| ||||    
T  55725764 atccttgcttggcggctattgagggatcgcttacctacaaaatacaatttggc 55725816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 431
Target Start/End: Original strand, 159954 - 160076
Alignment:
Q  309 agtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatt 408  Q
    |||||| || |||||||||||||| ||||| ||| | ||  ||||||||||| |||||||||| || ||||||||||| || ||       |||||||||    
T  159954 agtggtaggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttgatt 160053  T
Q  409 tggttactttgtgtttctgtgtt 431  Q
    |||||  |||||||||| |||||    
T  160054 tggttgttttgtgtttcggtgtt 160076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 160
Target Start/End: Complemental strand, 8361263 - 8361126
Alignment:
Q  23 ttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttc 122  Q
    |||||||||| || |||||  || || |||||||||| ||||| | | ||| ||  ||| |||||||  ||||||| |||||||||||  | ||||||||    
T  8361263 ttgttcgtggtgtatatgatttgttgccatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcccttaaaagtttc 8361164  T
Q  123 tatccttgcatggcgacttctgagggatcggttaccta 160  Q
    ||||||||  |||||||| |||||| |||| |||||||    
T  8361163 tatccttgtttggcgactgctgaggaatcgtttaccta 8361126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 20002887 - 20002750
Alignment:
Q  24 tgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttct 123  Q
    ||||||||| || ||||||||| |||||||||| || ||||| | | ||  ||  ||| |||||||  ||||||| |||||||||| | | |||||||||    
T  20002887 tgttcgtggtgtttatgacatgttgacatcacacgaacaacctcatgttaatcaaaatatggagttaatttggcataaacaggttcttttaaaagtttct 20002788  T
Q  124 atccttgcatggcgacttctgagggatcggttacctac 161  Q
    ||| |||| ||||| ||  |||||||||| ||||||||    
T  20002787 atcattgcttggcggctgttgagggatcgtttacctac 20002750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 2822015 - 2822152
Alignment:
Q  24 tgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttct 123  Q
    ||||| ||| || |||||| || |||||||| |||| ||||| | ||||| ||  ||| |||||||  | |||||||||||||| ||||| ||||||||     
T  2822015 tgttcatggggtatatgacttgttgacatcataggaacaacctcatattcatcaaaatatggagttaatctggcacaaacaggtacctctaaaagtttca 2822114  T
Q  124 atccttgcatggcgacttctgagggatcggttacctac 161  Q
     ||| ||| |||||| |  |||||||||| ||||||||    
T  2822115 gtccatgcttggcgattgttgagggatcgcttacctac 2822152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 13 - 431
Target Start/End: Original strand, 235404 - 235824
Alignment:
Q  13 ggtgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctc 112  Q
    |||||||||| ||| |||||||||||||||||| |||||||||||||||| ||||   | | ||  ||| |||||||  ||||||| |||||||||| ||    
T  235404 ggtgggtattctgtacgtggagtctatgacatgttgacatcacaggagcagccccagttacatcaaaatatggagttaatttggcataaacaggttcatc 235503  T
Q  113 tcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaaca--atctggcgaatcgtggtcttttacctttggatgcgcggtcg 210  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |  || |||| || |||||  ||||||||||||| ||||||| |    
T  235504 tcaaagtctctatccttgcttggcgacttctgagggatcggttacctacaaaaaaaatcatttggcaaaccgtggcattttacctttggaggcgcggttg 235603  T
Q  211 tgtgtctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggag 310  Q
    ||||| ||  |||||| |  ||| |||||||||| ||||||||| |||   ||  | ||||| || || |||||| |   ||||||||||||||||||||    
T  235604 tgtgtttctggttgcgagaacgttgaagatgttaatcatttgtttttgtcttgttcaacttttagtgccttatggccaatggtgcgggcatggctcggag 235703  T
Q  311 tggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttg 410  Q
    |||| ||||||||||||||||| | ||| ||| |||| ||||||||||||||||||||||| || ||||||||||| || ||       |||||||||||    
T  235704 tggtaggggtcgactctcaatcaaattcagatcattttttgcaatttattaattatgcaggttgttcgagagggcgacgttctttcttccacttgatttg 235803  T
Q  411 gttactttgtgtttctgtgtt 431  Q
    ||| ||||||||||| |||||    
T  235804 gttgctttgtgtttcggtgtt 235824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 13 - 431
Target Start/End: Complemental strand, 47877156 - 47876738
Alignment:
Q  13 ggtgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctc 112  Q
    |||||||||| ||| |||||||| |||||||||||||||||||||||||| ||||   | | ||  |||  ||||||  ||||||| |||||||||||||    
T  47877156 ggtgggtattatgtacgtggagtttatgacatgctgacatcacaggagcagccccagttacatcaaaatagggagttaatttggcataaacaggttcctc 47877057  T
Q  113 tcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtg 212  Q
    ||||||| ||||||||||| |||||||||||||| |||| ||||||||||||||| ||| |||| || |||||  ||||||||||||| ||||||| |||    
T  47877056 tcaaagtatctatccttgcttggcgacttctgagagatcagttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtg 47876957  T
Q  213 tgtctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtg 312  Q
    ||| ||  | ||||||  ||| |||||||||| ||||||||| |||   ||  | ||||| || || |||||      | ||||||||||||| ||||||    
T  47876956 tgtttctggatgcgggaacgttgaagatgttaatcatttgtttttgtcttgttcaacttttagtgcattatgacaattgatgcgggcatggctaggagtg 47876857  T
Q  313 gtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggt 412  Q
    || |||||||||||| |||| ||||| ||| |||| ||||||||||||||||||||||| || |||||||||||  | ||       |||||||||||||    
T  47876856 gtaggggtcgactcttaatcaacttcagattattttttgcaatttattaattatgcaggttgttcgagagggcgatggtctttcttccacttgatttggt 47876757  T
Q  413 tactttgtgtttctgtgtt 431  Q
    | ||||||||||| |||||    
T  47876756 tgctttgtgtttcggtgtt 47876738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 15 - 386
Target Start/End: Complemental strand, 17720806 - 17720435
Alignment:
Q  15 tgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctc 114  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||| || |   | | ||  || ||||||||  ||||||| | |||||||||||||    
T  17720806 tgggtattccgttcgtggagcctatgacatgctgacatcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttcctctc 17720707  T
Q  115 aaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| || |||||  |||||||| |||| ||||||  |||||    
T  17720706 aaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaagataatttggcaaaccgtggcattttacctctggaggcgcggatgtgtg 17720607  T
Q  215 tctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggt 314  Q
    | || ||||| |||   |  |||||||||| ||||||||| |||   ||  | ||||| || || |||||| |   |||||  |||||||| ||||||||    
T  17720606 tttctagttgtgggaatgaagaagatgttaatcatttgtttttgtcttgtgcaacttttagtgccttatggccattggtgcaagcatggcttggagtggt 17720507  T
Q  315 gggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcg 386  Q
     ||||| ||||||||||| ||||| ||| ||||  |||||||||||||||||||||| || |||||||||||    
T  17720506 aggggttgactctcaatcaacttcagatcatttagtgcaatttattaattatgcaggatgttcgagagggcg 17720435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 13 - 371
Target Start/End: Complemental strand, 37919717 - 37919359
Alignment:
Q  13 ggtgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctc 112  Q
    |||||||||| ||| |||||||| |||||||||||||||||||||||||| ||||   | | || | || || ||||  ||||| | |||||||||||||    
T  37919717 ggtgggtattctgtgcgtggagtatatgacatgctgacatcacaggagcagccccaattacatcatcatatgaagttaatttggtataaacaggttcctc 37919618  T
Q  113 tcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtg 212  Q
    ||||||| ||||||||||| |||||||| ||||| ||| |||||||||||||||| ||| |||| || ||| |  ||||||||||||| ||||||| |||    
T  37919617 tcaaagtatctatccttgcttggcgactcctgagagattggttacctacaaaaaataatttggcaaaccgttgcattttacctttggaggcgcggttgtg 37919518  T
Q  213 tgtctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtg 312  Q
    ||| || ||||| |||  ||| |||||||||| |||||| || |||   ||    ||||| || || |||||| |   ||||||||||||||| ||||||    
T  37919517 tgtttctagttgtgggaacgttgaagatgttaatcatttatttttgtcttgtgtaacttttagtgcattatggccaatggtgcgggcatggctaggagtg 37919418  T
Q  313 gtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagg 371  Q
    || |||||||| |||||||| ||||| ||| |||| ||||||||||||||||| |||||    
T  37919417 gtaggggtcgaatctcaatcaacttcagatcattttttgcaatttattaattacgcagg 37919359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 15 - 424
Target Start/End: Original strand, 11277221 - 11277630
Alignment:
Q  15 tgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctc 114  Q
    |||||| | ||| |||||||||||||| |||||||||||||||||||||||||   | |  | |||| |||||||  ||||||| |||||||||||||||    
T  11277221 tgggtactctgtacgtggagtctatgatatgctgacatcacaggagcaaccccagttacaccataatatggagttaatttggcataaacaggttcctctc 11277320  T
Q  115 aaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtg 214  Q
    ||||| ||||||||||| ||||||||| |||| |||||||||||||| ||||| ||| |||| || |||||  ||||||||||||| ||||||| |||||    
T  11277321 aaagtatctatccttgcttggcgacttttgagagatcggttacctacgaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtg 11277420  T
Q  215 tctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggt 314  Q
    | ||  | || |||  ||| |||||||||| ||||||||| | |   ||    | ||| || || |||||| |   |||||| |||||||| ||||||||    
T  11277421 tttctggatgtgggaacgttgaagatgttaatcatttgttttagtcttgtgtaaattttagtgcattatggccaatggtgcgagcatggctaggagtggt 11277520  T
Q  315 gggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggtta 414  Q
    ||| ||||| ||||| || ||||| ||| |||| ||||||||||||||||| ||||| || ||||||||||| || ||       ||||| ||||||||     
T  11277521 gggagtcgattctcattcaacttcagatcattttttgcaatttattaattacgcaggttgttcgagagggcgtcggtctttcttccacttaatttggttg 11277620  T
Q  415 ctttgtgttt 424  Q
    ||||||||||    
T  11277621 ctttgtgttt 11277630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 28 - 383
Target Start/End: Complemental strand, 29968133 - 29967778
Alignment:
Q  28 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 127  Q
    ||||||| |||||| |||||||||||||||||||||||||   | |  | || | |||||||  ||||||| |||||||||||||||||||| |||||||    
T  29968133 cgtggagcctatgatatgctgacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatcc 29968034  T
Q  128 ttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcgg 227  Q
    |||| ||  ||||| |||| |||||||||||||| ||||  ||| |||| || | |||  ||||||||||||| ||||||| |||||| ||  | || ||    
T  29968033 ttgcttgaggacttttgagagatcggttacctacgaaaagtaatttggcaaaccatggcattttacctttggaggcgcggttgtgtgtttctggatgtgg 29967934  T
Q  228 ggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactct 327  Q
    |  ||| |||||||||| ||||||||| |||   ||    ||||| || ||||||||| |   |||||| |||||||| ||||||||||| || || |||    
T  29967933 gaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgctttatggccaatggtgcgagcatggctaggagtggtgggagtagattct 29967834  T
Q  328 caatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagg 383  Q
    || || || |  ||| || | ||||||||||| ||||| ||||| || ||||||||    
T  29967833 cattcaaccttagatcatcttttgcaatttatcaattacgcaggttgttcgagagg 29967778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 15 - 165
Target Start/End: Original strand, 4938097 - 4938247
Alignment:
Q  15 tgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctc 114  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| |||||||| ||||||    
T  4938097 tgggtattctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctc 4938196  T
Q  115 aaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaa 165  Q
    ||||| ||||||||||| ||||||||  |||||||||||||||||||||||    
T  4938197 aaagtctctatccttgcttggcgactaatgagggatcggttacctacaaaa 4938247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 23 - 161
Target Start/End: Complemental strand, 18532791 - 18532653
Alignment:
Q  23 ttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttc 122  Q
    |||||||||| || |||||| || |||||||||| || ||||| | | ||| ||  ||| |||||||  | | ||| |||||||||||| | |||||||     
T  18532791 ttgttcgtggtgtatatgacttgttgacatcacatgaacaacctcatgttcatcaaaatatggagttaatctcgcataaacaggttcctttaaaagttta 18532692  T
Q  123 tatccttgcatggcgacttctgagggatcggttacctac 161  Q
    ||||||||| ||||||||  |||||||||| ||||||||    
T  18532691 tatccttgcttggcgactgttgagggatcgtttacctac 18532653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 8e-71; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 13 - 425
Target Start/End: Complemental strand, 42928304 - 42927892
Alignment:
Q  13 ggtgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctc 112  Q
    |||||||||| ||| |||||||||||||||||||||||||| ||||| || ||||   | | ||| ||| |||||||  ||||| | |||||||||||||    
T  42928304 ggtgggtattctgtacgtggagtctatgacatgctgacatcgcaggaacagccccagttacatccaaatatggagttaatttggtataaacaggttcctc 42928205  T
Q  113 tcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtg 212  Q
    ||||||| ||||||||||  ||||| |||||||||||||||||| |||||||||| ||| || | ||  ||||  ||||||| ||||| | ||||| |||    
T  42928204 tcaaagtctctatccttgtttggcggcttctgagggatcggttaactacaaaaaataatttgacaaactgtggcattttacccttggaggtgcggttgtg 42928105  T
Q  213 tgtctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtg 312  Q
    ||||||  | ||||||  ||| |||||||| | |||||||||||||   || || ||||| || || |||||  |   ||||||||||||||||||||||    
T  42928104 tgtctctggatgcgggaacgttgaagatgtcaatcatttgttcttgtcatgtccaacttttagtgccttatgaccattggtgcgggcatggctcggagtg 42928005  T
Q  313 gtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggt 412  Q
    || ||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||||| || ||||||||||| || ||       |||||||||||||    
T  42928004 gtaggggtcgactctcaatcaacttcagatcattttttgcaatttattaattatgcaggttgttcgagagggcgacgttcatttttccacttgatttggt 42927905  T
Q  413 tactttgtgtttc 425  Q
    | |||||||||||    
T  42927904 tgctttgtgtttc 42927892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 30 - 386
Target Start/End: Original strand, 28535659 - 28536015
Alignment:
Q  30 tggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcctt 129  Q
    ||||| ||||||||||||||||||||||||||| || |   | | ||  ||  |||||||  ||||||| | ||||||||||||||||||||||||||||    
T  28535659 tggagcctatgacatgctgacatcacaggagcagcctcagttacatcaaaacatggagttaatttggcatacacaggttcctctcaaagtttctatcctt 28535758  T
Q  130 gcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcgggg 229  Q
    || ||||||||||||||||||||||||||||||||||| ||| |||| || |||||  ||||||||||||| |||| |  |||||| ||  |||| |||     
T  28535759 gcttggcgacttctgagggatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagatgtgtgtttctggttgtggga 28535858  T
Q  230 ccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactctca 329  Q
      || ||||||||   ||||||||| |||   ||  | ||||| || || |||||| |   ||||||||||||||| |||||||| ||||| ||||||||    
T  28535859 atgtagaagatgtcgatcatttgtttttgtcttgtgcaacttttagtgccttatggccaatggtgcgggcatggcttggagtggtaggggttgactctca 28535958  T
Q  330 atctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcg 386  Q
    ||| ||||| ||| ||||  ||||||||||||||||||| || || |||||||||||    
T  28535959 atcaacttcagatcattttgtgcaatttattaattatgctggttgttcgagagggcg 28536015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 15 - 424
Target Start/End: Complemental strand, 23238555 - 23238145
Alignment:
Q  15 tgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctc 114  Q
    |||||| | ||| |||||||||||||| ||||| |||||||||||||||||||   | |  | |||| |||||||  ||||||| ||| |||||||||||    
T  23238555 tgggtactctgtacgtggagtctatgatatgctaacatcacaggagcaaccccagttacaccataatatggagttaatttggcataaataggttcctctc 23238456  T
Q  115 aaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtg 214  Q
    ||||||||||||||||| ||| ||||| |||| |||||||||||||| ||||  ||| |||| || |||||  ||||| ||||||| ||||||| |||||    
T  23238455 aaagtttctatccttgcttggagacttttgagagatcggttacctacgaaaagtaatttggcaaaccgtggcattttagctttggaggcgcggttgtgtg 23238356  T
Q  215 tctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggt 314  Q
    | ||  | || |||  ||| |||||||||| ||||||||| |||   ||    ||||| || || |||||| |   |||||| |||||||| ||||||||    
T  23238355 tttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggccaatggtgcgagcatggctaggagtggt 23238256  T
Q  315 gggg-gtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggtt 413  Q
    |||| ||||| ||||| || || |||||| |||| ||||||||||||||||| ||||| || ||||||||||| || ||       ||||| ||||||||    
T  23238255 ggggagtcgattctcattcaacgtctgatcattttttgcaatttattaattacgcaggttgttcgagagggcgtcggtctttcttccacttaatttggtt 23238156  T
Q  414 actttgtgttt 424  Q
     ||||||||||    
T  23238155 gctttgtgttt 23238145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 13 - 386
Target Start/End: Original strand, 35983758 - 35984131
Alignment:
Q  13 ggtgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctc 112  Q
    |||||||| | ||| ||||||| ||||||||||||||||||||||||||| || |   | | ||  ||  |||||||  ||||||  | |||||||||||    
T  35983758 ggtgggtactctgtacgtggagcctatgacatgctgacatcacaggagcagcctcagttacatcaaaacatggagttaatttggcttacacaggttcctc 35983857  T
Q  113 tcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtg 212  Q
    ||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||| ||| |||| || | ||   ||||||||||||| ||||||| |||    
T  35983858 tcaaagtatctatccttgcttggcgacttctgaggaatcggttacctacaaaaaataatttggcaaaccatgacattttacctttggaggcgcggttgtg 35983957  T
Q  213 tgtctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtg 312  Q
    ||| |   |||| |||   || |||| ||| | ||||||||| |||   ||  | ||||| || || |||||| |   |||||||||||| || ||||||    
T  35983958 tgtttttggttgtgggaatgtagaagttgtcaatcatttgtttttgtcttgtgcaacttttagtgccttatggccaatggtgcgggcatgacttggagtg 35984057  T
Q  313 gtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcg 386  Q
    || ||||||||||||||||| ||||| ||| ||||  |||||||||||||||||||||| || |||||||||||    
T  35984058 gtaggggtcgactctcaatcaacttcagatcattttatgcaatttattaattatgcaggttgttcgagagggcg 35984131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 83 - 431
Target Start/End: Original strand, 19255159 - 19255508
Alignment:
Q  83 tggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcg 182  Q
    |||||||  ||||||| |||||| || |||||||||| ||||||||||| |||||  |||||||||||||||||||||||||||| ||| |||| ||| |    
T  19255159 tggagttaatttggcataaacagatttctctcaaagtatctatccttgcttggcggtttctgagggatcggttacctacaaaaaataatttggcaaattg 19255258  T
Q  183 tggtcttttacctttggat-gcgcggtcgtgtgtctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgcttt 281  Q
    |||  || | || |||||  ||||||| ||||||| |  | ||||||  ||| |||||||| | |||||||||||||   || || |||||  | || ||    
T  19255259 tggcattattcccttggagcgcgcggttgtgtgtcactggatgcgggcacgttgaagatgtcaatcatttgttcttgtcttgtccaacttttggtgcctt 19255358  T
Q  282 atggtctgcggtgcgggcatggctcggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgaga 381  Q
    |||| |   |||||||||||||||||||||||| |||||||| |||||| | ||||| ||| |||| ||||||||||||||||| ||||| || ||||||    
T  19255359 atggacattggtgcgggcatggctcggagtggtaggggtcgattctcaaacaacttcagatcattttttgcaatttattaattacgcaggttgttcgaga 19255458  T
Q  382 gggcggcgatcnnnnnnncacttgatttggttactttgtgtttctgtgtt 431  Q
      ||| |||||       |||||||||||||| ||||||||||| |||||    
T  19255459 ttgcgacgatcatttttccacttgatttggttgctttgtgtttcggtgtt 19255508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 15 - 431
Target Start/End: Original strand, 30732283 - 30732699
Alignment:
Q  15 tgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctc 114  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| |||||||||||||||    
T  30732283 tgggtattctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctc 30732382  T
Q  115 aaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtg 214  Q
    ||||| |||||| |||| |||||||||||||||||||||||||||||||||   ||| |||| ||||||||  || || || |||| | |||||  ||||    
T  30732383 aaagtatctatctttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtg 30732482  T
Q  215 tctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggt 314  Q
    | ||  | || |||   |||||||||||| |||||||||| |||   ||  | |||||  | || |||| | |   ||||||||  ||| | || |||||    
T  30732483 tttctggatgtgggattgtcgaagatgtttctcatttgtttttgtcttgtacaacttttggtgcattatagccgatggtgcgggattggttaggcgtggt 30732582  T
Q  315 gggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggtta 414  Q
     || |||||||||| ||| ||||| ||| ||||   ||||||||||||||||||||| || ||||||||||| || ||       ||||||||||||||     
T  30732583 aggtgtcgactctcgatcaacttcagatcattttgagcaatttattaattatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttg 30732682  T
Q  415 ctttgtgtttctgtgtt 431  Q
    ||||||||||| |||||    
T  30732683 ctttgtgtttcggtgtt 30732699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 423
Target Start/End: Complemental strand, 12825370 - 12824962
Alignment:
Q  15 tgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctc 114  Q
    |||||||| ||  ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| ||||| |||||||||    
T  12825370 tgggtattctgcacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaagttcctctc 12825271  T
Q  115 aaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtg 214  Q
    ||||| | ||||||||| |||||||||||||||||||||||||||||||||   ||| |||| ||||||||  || || || |||| | |||||  ||||    
T  12825270 aaagtatgtatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtg 12825171  T
Q  215 tctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggt 314  Q
    | ||  | || |||   |||||||||||| |||||||||| |||   ||  | |||||  | || |||||| |   ||||||||  ||| | || |||||    
T  12825170 tttctggatgtgggattgtcgaagatgtttctcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggt 12825071  T
Q  315 gggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggtta 414  Q
     || |||||||||| ||| ||||| ||| ||||   ||||||||||||||||||||| || ||||||||||| || ||       ||||||||||||||     
T  12825070 aggtgtcgactctcgatcaacttcagatcattttgagcaatttattaattatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttg 12824971  T
Q  415 ctttgtgtt 423  Q
    |||||||||    
T  12824970 ctttgtgtt 12824962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 15 - 431
Target Start/End: Original strand, 27117130 - 27117546
Alignment:
Q  15 tgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctc 114  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||   ||   | |  | |||| |||| ||  ||||||| |||||||||||||||    
T  27117130 tgggtattctgtacgtggagtctatgacatgctgacatcacaggagcagatccagttacaccataatatggacttaatttggcataaacaggttcctctc 27117229  T
Q  115 aaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtg 214  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||| ||||||   ||| |||  || |||||  || || || |||| | |||||  ||||    
T  27117230 aaagtatctatccttgcttggcgacttctgagggaccggttacccacaaaacttaatttggtaaaccgtggcattctatctatggaggagcggttatgtg 27117329  T
Q  215 tctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggt 314  Q
    | ||  | || |||   |||||||||||| |||||||||| |||   ||  | |||||  | || |||||| |   |||| |||  ||| | ||||||||    
T  27117330 tttctggctgtgggaatgtcgaagatgtttctcatttgtttttgtcttgtgcaacttttggagcattatggccgatggtgtgggattggttaggagtggt 27117429  T
Q  315 gggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggtta 414  Q
     ||||||||||||||||| ||||| ||| ||||  ||||||||||||||||||  || || ||||||||||| || ||       ||||||||||||||     
T  27117430 aggggtcgactctcaatcaacttcagatcattttgtgcaatttattaattatgtcggttgttcgagagggcgacggtctttcttccacttgatttggttg 27117529  T
Q  415 ctttgtgtttctgtgtt 431  Q
    ||||||||||| |||||    
T  27117530 ctttgtgtttcggtgtt 27117546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 78 - 424
Target Start/End: Complemental strand, 8228134 - 8227788
Alignment:
Q  78 taatttggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcg 177  Q
    |||| |||||||  |||| || |||||||||||||||||||| ||||||||||| ||| ||||| |||| |||||||||||||| ||||  ||| ||||     
T  8228134 taatatggagttaatttgacataaacaggttcctctcaaagtatctatccttgcttggagacttttgagagatcggttacctacgaaaagtaatttggca 8228035  T
Q  178 aatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcg 277  Q
    || ||||   ||||||||||||| ||||||| |||||| ||  | || | |  ||| |||||||||| ||||||||| |||   ||    ||||| || |    
T  8228034 aaccgtgacattttacctttggaggcgcggttgtgtgtttctggatgtgagaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtg 8227935  T
Q  278 ctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctc 377  Q
    | |||||| |   |||||| |||||||| ||||||||||| ||||| ||||| || || || ||| |||| ||||||||||||||||| ||||| || ||    
T  8227934 cattatggccaatggtgcgagcatggctaggagtggtgggagtcgattctcattcaacctcagatcattttttgcaatttattaattacgcaggttgttc 8227835  T
Q  378 gagagggcggcgatcnnnnnnncacttgatttggttactttgtgttt 424  Q
    ||||||||| || ||       ||||| |||||||| ||||||||||    
T  8227834 gagagggcgtcggtctttcttccacttaatttggttgctttgtgttt 8227788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 431
Target Start/End: Complemental strand, 42513891 - 42513475
Alignment:
Q  15 tgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctc 114  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| |||||||| ||||||    
T  42513891 tgggtattctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctc 42513792  T
Q  115 aaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtg 214  Q
    ||||| ||||||||||| ||||||||  |||||||||||||||||||||||   ||| |||| |||||||   || || || |||| | |||||  || |    
T  42513791 aaagtctctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttggcaaatcgtgacattctatctgtggaggagcggttatgcg 42513692  T
Q  215 tctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggt 314  Q
    |  |  | || |||   |||||||||||||||||||| || |||   ||  | |||||  | || |||||| |   |||||||   ||| | ||||||||    
T  42513691 ttgctggatgtgggattgtcgaagatgttactcatttttttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggt 42513592  T
Q  315 gggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggtta 414  Q
     || |||||||||||||| ||||| ||| | ||  ||||||||||| |||||||||| || ||||||||||| || ||       ||||||||||||||     
T  42513591 aggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttg 42513492  T
Q  415 ctttgtgtttctgtgtt 431  Q
    ||||||||||| |||||    
T  42513491 ctttgtgtttcggtgtt 42513475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 291 - 386
Target Start/End: Complemental strand, 25824906 - 25824811
Alignment:
Q  291 ggtgcgggcatggctcggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcg 386  Q
    ||||||||||||||| |||||||| ||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||||| || |||||||||||    
T  25824906 ggtgcgggcatggcttggagtggtaggggtcgactctcaatcaacttcagatcattttttgcaatttattaattatgcaggttgttcgagagggcg 25824811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 186
Target Start/End: Complemental strand, 31641672 - 31641512
Alignment:
Q  25 gttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttcta 124  Q
    ||||||||||  |||||||||||||||||||||||||| || |   | | ||  ||  |||||||  ||||||| | |||||||||||| ||||||||||    
T  31641672 gttcgtggagcatatgacatgctgacatcacaggagcagcctcacttacatcaaaacatggagttaatttggcatacacaggttcctct-aaagtttcta 31641574  T
Q  125 tccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggt 186  Q
    ||||||||||| |||| |||||||||||||||||||||||||| ||| |||| || ||||||    
T  31641573 tccttgcatggagactactgagggatcggttacctacaaaaaataatttggcaaaccgtggt 31641512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 27767204 - 27767063
Alignment:
Q  24 tgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttct 123  Q
    ||||||||| || |||||| || ||||||||||||| ||||| | | ||| ||  ||| |||||||  ||||||| |||||||||||| | ||||||| |    
T  27767204 tgttcgtggtgtatatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttat 27767105  T
Q  124 atccttgcatggcgacttctgagggatcggttacctacaaaa 165  Q
    |||||||| ||||||||  |||||||||| ||||||||||||    
T  27767104 atccttgcttggcgactgttgagggatcgtttacctacaaaa 27767063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 33385352 - 33385489
Alignment:
Q  24 tgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttct 123  Q
    ||||||||| || |||||| || ||||||||||||| ||||| | ||||| ||  ||| |||||||  ||||||| |||||||||||  | |||||||||    
T  33385352 tgttcgtggtgtatatgacttgttgacatcacaggaacaacctcatattcatcaaaatatggagttaatttggcataaacaggttcccttaaaagtttct 33385451  T
Q  124 atccttgcatggcgacttctgagggatcggttacctac 161  Q
    |||||||| ||||||||  |||||||||| ||||||||    
T  33385452 atccttgcttggcgactgttgagggatcgtttacctac 33385489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 25857402 - 25857539
Alignment:
Q  24 tgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttct 123  Q
    ||||||||| |  |||||| || ||||||||||||| ||||| | | ||| ||  ||| |||||||  ||||||| |||||||||||| | |||||||||    
T  25857402 tgttcgtggtgcatatgacttgttgacatcacaggaacaacctcttgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttct 25857501  T
Q  124 atccttgcatggcgacttctgagggatcggttacctac 161  Q
    |||||||| ||||||||  |||||||||| ||||||||    
T  25857502 atccttgcttggcgactgttgagggatcgcttacctac 25857539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 8300160 - 8300297
Alignment:
Q  24 tgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttct 123  Q
    ||||||||| |  |||||| || ||||||||||||| ||||| | | ||| ||  ||| |||||||  ||||||| |||||||||||| | |||||||||    
T  8300160 tgttcgtggtgcatatgacctgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttct 8300259  T
Q  124 atccttgcatggcgacttctgagggatcggttacctac 161  Q
    |||||||  ||||||||  |||||||||| ||||||||    
T  8300260 atccttgtttggcgactgttgagggatcgcttacctac 8300297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 83 - 161
Target Start/End: Complemental strand, 10776867 - 10776789
Alignment:
Q  83 tggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctac 161  Q
    |||||||  ||||||| |||||||||||  | ||||||||||||||||| |||||||| ||||||||||| ||||||||    
T  10776867 tggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgctgagggatcgtttacctac 10776789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 425
Target Start/End: Complemental strand, 3418662 - 3418544
Alignment:
Q  307 ggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttga 406  Q
    |||||||| || |||||||||||||| ||||| ||| | ||  ||||||||||| |||||||||| || ||||||||||| || ||       || ||||    
T  3418662 ggagtggtaggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccatttga 3418563  T
Q  407 tttggttactttgtgtttc 425  Q
    ||||||| |||||||||||    
T  3418562 tttggttgctttgtgtttc 3418544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 18359070 - 18359207
Alignment:
Q  24 tgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttct 123  Q
    ||||||||| || ||||||||| ||||||||||||| ||||| | | ||| ||  ||| |||||||  | | ||| |||||||||||| | ||||||||     
T  18359070 tgttcgtggtgtatatgacatgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatctagcataaacaggttcctttaaaagtttca 18359169  T
Q  124 atccttgcatggcgacttctgagggatcggttacctac 161  Q
    |||||||| |||||  |  |||||||||| ||||||||    
T  18359170 atccttgcttggcggttgttgagggatcgtttacctac 18359207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 431
Target Start/End: Original strand, 12820213 - 12820334
Alignment:
Q  310 gtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgattt 409  Q
    ||||| || |||||||||| ||| ||||| ||| ||||   ||||||||||||||||||||| || ||||||||||| || ||       || |||||||    
T  12820213 gtggtaggtgtcgactctcgatcaacttcagatcattttgagcaatttattaattatgcaggttgttcgagagggcgacggtctttcttccatttgattt 12820312  T
Q  410 ggttactttgtgtttctgtgtt 431  Q
    |||| ||||||||||| |||||    
T  12820313 ggttgctttgtgtttcggtgtt 12820334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 27795656 - 27795469
Alignment:
Q  13 ggtgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctc 112  Q
    ||||| |||| ||||||||| || |||||| |  ||||||| || || ||||| |  |||| ||| | | ||||||| || |||||||||||||| ||||    
T  27795656 ggtggctattctgttcgtggggtatatgacttattgacatcgcatgaacaacctcagattcatccaagtatggagttagtctggcacaaacaggtacctc 27795557  T
Q  113 tcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttgga 200  Q
    |||||||| |  || |||| |||||  |  |||||||||| || ||||| |||  |||| |||| ||||||||  ||||||| |||||    
T  27795556 tcaaagttacagtctttgcttggcggttgttgagggatcgtttgcctactaaagccaatttggcaaatcgtggcattttaccgttgga 27795469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 161
Target Start/End: Complemental strand, 33169761 - 33169683
Alignment:
Q  83 tggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctac 161  Q
    |||||||| |||||||||||||||| ||| | ||||| |||||  |||| |||||  | |||||||| |||||||||||    
T  33169761 tggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctac 33169683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 12820036 - 12820068
Alignment:
Q  133 tggcgacttctgagggatcggttacctacaaaa 165  Q
    ||||||||| |||||||||||||||||||||||    
T  12820036 tggcgacttatgagggatcggttacctacaaaa 12820068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 7e-59; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 13 - 425
Target Start/End: Complemental strand, 13396561 - 13396149
Alignment:
Q  13 ggtgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctc 112  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||||||||| ||||   | | || | || |||||||  ||||||| ||||| |||||||    
T  13396561 ggtgggtattctgtacgtggggtctatgacatgctgacatcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaagttcctc 13396462  T
Q  113 tcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtg 212  Q
    ||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||| ||| |||| || |||||  ||||||||||||| ||||||| |||    
T  13396461 tcaaagtatctatccttgcttggcgactcctgagagatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtg 13396362  T
Q  213 tgtctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtg 312  Q
    ||| ||  | || |||  ||| |||||||||| ||||||||| |||   ||    ||||| || || |||||| |   ||||||||||||||| ||||||    
T  13396361 tgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggccaatggtgcgggcatggctaggagtg 13396262  T
Q  313 gtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggt 412  Q
    || |||||||| |||||||| ||||| ||| |||   |||||||||||||||| ||||| || | |||| |||| || ||       |||||||||||||    
T  13396261 gtaggggtcgaatctcaatcaacttcagatcattgtctgcaatttattaattacgcaggttgtttgagaaggcgacggtctttcttccacttgatttggt 13396162  T
Q  413 tactttgtgtttc 425  Q
    | |||||||||||    
T  13396161 tgctttgtgtttc 13396149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 25 - 386
Target Start/End: Complemental strand, 9922762 - 9922401
Alignment:
Q  25 gttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttcta 124  Q
    |||||||||| ||||||||||||||||||||||||||| || |   | | ||  || ||||||||  ||||||| | |||||||||||||||||||||||    
T  9922762 gttcgtggagcctatgacatgctgacatcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttcctctcaaagtttcta 9922663  T
Q  125 tccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttg 224  Q
    |||||||||| |||||||||||||||||||||||||||||| | ||| |||| || |||||  |||||||| |||| ||||||  |||||| ||  ||||    
T  9922662 tccttgcatgacgacttctgagggatcggttacctacaaaagataatttggcaaaccgtggcattttacctctggaggcgcggatgtgtgtttctggttg 9922563  T
Q  225 cggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgac 324  Q
     |||   || |||||||| | ||||||||| |||   ||  | ||||| || || |||||| |   |||||| |||||||| |||||||| ||||| |||    
T  9922562 tgggaatgtagaagatgtcaatcatttgtttttgtcttgtgcaacttttagtgccttatggccattggtgcgagcatggcttggagtggtaggggttgac 9922463  T
Q  325 tctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcg 386  Q
    |||||||| ||||| ||| ||||  |||||||||||||||||||||| || |||||||||||    
T  9922462 tctcaatcaacttcagatcatttagtgcaatttattaattatgcaggatgttcgagagggcg 9922401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 13 - 431
Target Start/End: Original strand, 41665336 - 41665754
Alignment:
Q  13 ggtgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctc 112  Q
    |||||||||| |||  |||| ||||||||||||||||||||||||||||| ||||   | | || | || |||||||  ||||||| |||||||||||||    
T  41665336 ggtgggtattctgtatgtggggtctatgacatgctgacatcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaggttcctc 41665435  T
Q  113 tcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtg 212  Q
    ||||||| ||||||||||| |||||| | || || |||| ||||||||||||||| ||| |||| || | ||   ||||||||||||| ||||||| |||    
T  41665436 tcaaagtatctatccttgcttggcgattcctaagagatcagttacctacaaaaaataatttggcaaaccatgacattttacctttggaggcgcggttgtg 41665535  T
Q  213 tgtctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtg 312  Q
    ||| ||  | || |||  ||| |||||||||| ||||||||| |||   ||    ||||| || || |||||| |   ||||||||||||||| ||||||    
T  41665536 tgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggccaatggtgcgggcatggctaggagtg 41665635  T
Q  313 gtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggt 412  Q
    || ||||| || |||||||| ||||| ||| |||   |||||||||||||||| ||||| || | |||| |||| |||||       |||||||||||||    
T  41665636 gtaggggttgaatctcaatcaacttcagatcattgtctgcaatttattaattacgcaggttgtttgagaaggcgacgatctttcttccacttgatttggt 41665735  T
Q  413 tactttgtgtttctgtgtt 431  Q
    | ||||||||||| |||||    
T  41665736 tgctttgtgtttcggtgtt 41665754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 78 - 424
Target Start/End: Complemental strand, 32266672 - 32266326
Alignment:
Q  78 taatttggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcg 177  Q
    ||||||||||||  ||||||| |||||||||||||||||||| ||||||||||| ||| ||||| |||| |||||||||||||| ||||  ||| ||||     
T  32266672 taatttggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagacttttgagagatcggttacctacgaaaagtaatttggca 32266573  T
Q  178 aatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcg 277  Q
    || |||||  ||||||||||||| ||||||| |||||| ||  | || |||  ||| |||||||||| ||||||||| |||   ||    ||||| || |    
T  32266572 aaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtg 32266473  T
Q  278 ctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctc 377  Q
    | || ||| |   |||||| |||||||| ||||||||||| ||||| ||||| || || || ||| |||| ||||||||||||||||| ||||| || ||    
T  32266472 cattgtggccaatggtgcgagcatggctaggagtggtgggagtcgattctcattcaacctcagatcattttttgcaatttattaattacgcaggttgttc 32266373  T
Q  378 gagagggcggcgatcnnnnnnncacttgatttggttactttgtgttt 424  Q
    ||||||||| || ||       ||||| |||||||| ||||||||||    
T  32266372 gagagggcgtcggtctttcttccacttaatttggttgctttgtgttt 32266326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 15 - 425
Target Start/End: Complemental strand, 8299974 - 8299564
Alignment:
Q  15 tgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctc 114  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||| | ||||   | |  | ||||||||| ||  ||||||| |||||||| ||||||    
T  8299974 tgggtattctgtacgtggagtctatgacatgctgacatcacaggagtagccccaattacaccataatttggacttaatttggcataaacaggtccctctc 8299875  T
Q  115 aaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtg 214  Q
    ||||| ||||||||||| |||||||| ||||||||||||||||||||||||   ||| |||| ||||||||  || || || |||| | ||| |  ||||    
T  8299874 aaagtatctatccttgcttggcgactactgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcgattatgtg 8299775  T
Q  215 tctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggt 314  Q
    |  |  | || |||   ||||||||||||||||||||||| |||   ||  | |||||  | || |||||| |   |||||||   ||| | ||||||||    
T  8299774 ttgctggatgtgggattgtcgaagatgttactcatttgtttttgtcctgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggt 8299675  T
Q  315 gggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggtta 414  Q
     || |||||||||||||| ||||| ||| | ||  ||||||||||| |||||||||| || ||||||||||| || ||       ||||||||||||||     
T  8299674 aggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttg 8299575  T
Q  415 ctttgtgtttc 425  Q
    |||||||||||    
T  8299574 ctttgtgtttc 8299564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 15 - 431
Target Start/End: Complemental strand, 7924557 - 7924141
Alignment:
Q  15 tgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctc 114  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| |||||||| ||||||    
T  7924557 tgggtattctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctc 7924458  T
Q  115 aaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtg 214  Q
    ||||| ||||||||||| ||||||||  |||||||||||||||||||||||   ||| |||| ||||||||  || || || |||| | |||||  || |    
T  7924457 aaagtctctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcg 7924358  T
Q  215 tctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggt 314  Q
    |  |  | || |||   ||||||||||||||||||||||| |||   ||  | |||||  | || |||||| |   |||||||   ||| | ||||||||    
T  7924357 ttgctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggt 7924258  T
Q  315 gggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggtta 414  Q
     || |||||||||||||| ||||| ||| | ||  ||||||||||| |||||||||| || ||||||||||  || ||       ||||||||||||||     
T  7924257 aggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcaacggtctttcttccacttgatttggttg 7924158  T
Q  415 ctttgtgtttctgtgtt 431  Q
    ||||||||||| |||||    
T  7924157 ctttgtgtttcggtgtt 7924141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 431
Target Start/End: Complemental strand, 172274 - 171858
Alignment:
Q  15 tgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctc 114  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||   ||   | |  | |||  |||| ||  ||||||| |||||||||||||||    
T  172274 tgggtattctgtacgtggagtctatgacatgctgacatcacaggagcagaaccagttacaccataaaatggacttaatttggcataaacaggttcctctc 172175  T
Q  115 aaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtg 214  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||| ||||||   ||| |||  || ||||   || || || |||| | |||||  ||||    
T  172174 aaagtatctatccttgcttggcgacttctgagggaccggttacccacaaaacttaatttggtaaaccgtgacattctatctatggaggagcggttatgtg 172075  T
Q  215 tctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggt 314  Q
    | ||  | || ||    |||||||||||| |||||||||| |||   ||  | |||||   ||| |||||| |   ||||||||  ||| | ||||||||    
T  172074 tttctggctgtggtaatgtcgaagatgtttctcatttgtttttgtcttgtgcaacttttgacgcattatggccgatggtgcgggattggttaggagtggt 171975  T
Q  315 gggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggtta 414  Q
     ||||||||||||||||| ||||| ||| ||||  ||||||||||||||||||| || || ||||||||||| || ||       ||||||||||||||     
T  171974 aggggtcgactctcaatcaacttcagataattttgtgcaatttattaattatgccggttgttcgagagggcgacggtctttcttccacttgatttggttg 171875  T
Q  415 ctttgtgtttctgtgtt 431  Q
    ||||||||||| |||||    
T  171874 ctttgtgtttcggtgtt 171858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 176
Target Start/End: Complemental strand, 13200285 - 13200133
Alignment:
Q  24 tgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttct 123  Q
    ||||||||| || ||||| ||| ||||||||||||| ||||| | | ||| ||  ||| ||||||| |||||||| |||||||||||||| ||||||||     
T  13200285 tgttcgtggtgtgtatgatatgttgacatcacaggaacaacctcatgttcatcaaaatatggagttagtttggcataaacaggttcctctaaaagtttca 13200186  T
Q  124 atccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggc 176  Q
    |||||||| ||||  ||  |||||||||| |||||||||||| ||||| ||||    
T  13200185 atccttgcttggcagctattgagggatcgtttacctacaaaatacaatttggc 13200133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 37 - 161
Target Start/End: Complemental strand, 20824445 - 20824321
Alignment:
Q  37 tatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggc 136  Q
    |||||| || ||||||||||||| ||||| | | ||| ||  ||| |||||||  ||||||| |||||||||||| | ||||||||||||||||| ||||    
T  20824445 tatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggc 20824346  T
Q  137 gacttctgagggatcggttacctac 161  Q
    ||||  |||||||||| ||||||||    
T  20824345 gactgttgagggatcgcttacctac 20824321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 161
Target Start/End: Complemental strand, 2170500 - 2170367
Alignment:
Q  28 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 127  Q
    ||||| || ||||||||| ||||||||||||| ||||| | | ||| ||  ||| |||||||  | ||||| |||||||||||| | |||||||||||||    
T  2170500 cgtggtgtatatgacatgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatctggcataaacaggttcctttaaaagtttctatcc 2170401  T
Q  128 ttgcatggcgacttctgagggatcggttacctac 161  Q
    |||| |||||||   |||||||||| ||||||||    
T  2170400 ttgcttggcgaccgttgagggatcgtttacctac 2170367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 17699644 - 17699507
Alignment:
Q  24 tgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttct 123  Q
    ||||||||| ||  ||||| || |||||||||| || ||||| | | ||| ||  ||| |||||||  ||||||| |||||||||||  | |||||||||    
T  17699644 tgttcgtggtgttcatgacttgttgacatcacatgaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcccttaaaagtttct 17699545  T
Q  124 atccttgcatggcgacttctgagggatcggttacctac 161  Q
    |||||||| |||||||| ||||||||||| ||||||||    
T  17699544 atccttgcttggcgactgctgagggatcgtttacctac 17699507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 425
Target Start/End: Complemental strand, 20496963 - 20496845
Alignment:
Q  307 ggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttga 406  Q
    |||||||| || |||||||||||||| ||||| ||| | ||  ||||||||||| |||||||||| || ||||||||||| || ||       |||||||    
T  20496963 ggagtggtaggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttga 20496864  T
Q  407 tttggttactttgtgtttc 425  Q
    ||||||| |||||||||||    
T  20496863 tttggttgctttgtgtttc 20496845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 298 - 424
Target Start/End: Original strand, 32567517 - 32567643
Alignment:
Q  298 gcatggctcggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnn 397  Q
    |||||||| ||||||||||| ||||| ||||| || || || ||| |||| ||||||||||||||||||||||| || || |||||||| || ||         
T  32567517 gcatggctaggagtggtgggagtcgattctcattcaacctcagatcattttttgcaatttattaattatgcaggttgttcaagagggcgtcggtctttct 32567616  T
Q  398 nncacttgatttggttactttgtgttt 424  Q
      ||||| |||||||| ||||||||||    
T  32567617 tccacttaatttggttgctttgtgttt 32567643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 37434294 - 37434157
Alignment:
Q  24 tgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttct 123  Q
    ||||||||| || |||||| || ||||||||||||| ||||| | | ||| ||  ||| |||||||  ||||||| ||||| |||||| | ||||| |||    
T  37434294 tgttcgtggtgtatatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacatgttcctttaaaagtctct 37434195  T
Q  124 atccttgcatggcgacttctgagggatcggttacctac 161  Q
    || ||||| ||||||||  |||||||||| ||||||||    
T  37434194 attcttgcttggcgactgttgagggatcgtttacctac 37434157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 161
Target Start/End: Original strand, 34137011 - 34137078
Alignment:
Q  94 tggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctac 161  Q
    ||||| |||||||| ||||||||||| ||||| ||||| ||||| ||| ||| |||||| ||||||||    
T  34137011 tggcataaacaggtacctctcaaagtctctattcttgcttggcggcttatgatggatcgtttacctac 34137078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 2529958 - 2529901
Alignment:
Q  114 caaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaat 171  Q
    ||||||||| |||||||| ||||| ||  |||||||||| |||||||||||| |||||    
T  2529958 caaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaat 2529901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 200
Target Start/End: Original strand, 13879524 - 13879641
Alignment:
Q  83 tggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcg 182  Q
    ||||||| || ||||||||| |||| |||||||||||| |  || |||| |||||  |  |||||||||| |||||||| |||  |||| |||| |||||    
T  13879524 tggagttagtctggcacaaataggtacctctcaaagttacagtctttgcttggcggttgttgagggatcgtttacctactaaagccaatttggcaaatcg 13879623  T
Q  183 tggtcttttacctttgga 200  Q
    |||  ||||||| |||||    
T  13879624 tggcattttaccgttgga 13879641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 43270542 - 43270470
Alignment:
Q  94 tggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaa 166  Q
    ||||| |||||||||||| | ||||||||||||||| | ||||||||  ||| |||||| || ||||| ||||    
T  43270542 tggcataaacaggttcctttaaaagtttctatccttacttggcgactgttgaaggatcgtttgcctactaaaa 43270470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 4e-48; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 29 - 362
Target Start/End: Complemental strand, 41207173 - 41206840
Alignment:
Q  29 gtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcct 128  Q
    ||||||| ||||||||||||||||| ||||| || || |   | | ||| ||| |||||||  ||||||| |||||||||||||||||||| ||||||||    
T  41207173 gtggagtttatgacatgctgacatcgcaggaacatcctcagttacatccaaatatggagttaatttggcataaacaggttcctctcaaagtctctatcct 41207074  T
Q  129 tgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcggg 228  Q
    ||| ||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||  || | || ||||| ||||||| ||||||| |  | ||||||    
T  41207073 tgcttggcggcttctgagggatcggttacctacaaaaaataatttggcaaatcgtggcattattcccttggaggcgcggttgtgtgtcactggatgcggg 41206974  T
Q  229 gccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactctc 328  Q
      ||| |||||||| | |||||||||||||   || || |||||  | || |||||| |   | |||||||||||||||||||||| ||||| |||||||    
T  41206973 cacgttgaagatgtcaatcatttgttcttgtcttgtccaacttttggtgccttatggccattgatgcgggcatggctcggagtggtaggggttgactctc 41206874  T
Q  329 aatctacttctgatgatttgttgcaatttattaa 362  Q
    |  | ||||| ||| |||| ||||||||||||||    
T  41206873 agacaacttcagatcattttttgcaatttattaa 41206840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 431
Target Start/End: Complemental strand, 4552340 - 4551924
Alignment:
Q  15 tgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctc 114  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| ||| ||||||||||     
T  4552340 tgggtattctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaataggttcctctt 4552241  T
Q  115 aaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtg 214  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||   ||| |||| ||||||||  || || || |||| | |||||  ||||    
T  4552240 aaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtg 4552141  T
Q  215 tctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggt 314  Q
    | ||  | || |||   |||||| ||||| |||||||||| |||   ||  | |||||  | || |||||  |   ||||||||  ||| | || |||||    
T  4552140 tttctggatgtgggattgtcgaaaatgtttctcatttgtttttgtcttgtgcaacttttggtgcattatgaccgatggtgcgggattggttaggcgtggt 4552041  T
Q  315 gggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggtta 414  Q
     || |||||||||| ||| ||||| ||| ||||   ||||||||||||||||||||| || ||||||||||| || ||       ||||||||||||||     
T  4552040 aggtgtcgactctcgatcaacttcagatcattttgagcaatttattaattatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttg 4551941  T
Q  415 ctttgtgtttctgtgtt 431  Q
    ||||||||||| |||||    
T  4551940 ctttgtgtttcggtgtt 4551924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 12645639 - 12645551
Alignment:
Q  83 tggagttggtttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaat 171  Q
    |||||||  ||||||| ||||||||| |||| |||||||| |||||||| ||||| ||  |||||||||| |||||||||||| |||||    
T  12645639 tggagttaatttggcataaacaggtttctctaaaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaat 12645551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 216
Target Start/End: Complemental strand, 15917736 - 15917624
Alignment:
Q  104 aggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgc 203  Q
    |||||||||| ||||| | ||||||||| ||| |||| ||||||||||| ||||||||||||   ||| |||| ||||||||| || | |||||||| |     
T  15917736 aggttcctctgaaagtctgtatccttgcttggggactgctgagggatcgtttacctacaaaagttaatttggcaaatcgtggtattattcctttggaagt 15917637  T
Q  204 gcggtcgtgtgtc 216  Q
    ||||| |||||||    
T  15917636 gcggttgtgtgtc 15917624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 161
Target Start/End: Complemental strand, 40176840 - 40176693
Alignment:
Q  14 gtgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctct 113  Q
    |||| |||| ||||| ||| || |||||| |  ||||||||||||| ||||| | ||||| ||  ||| ||||||| || |||||||||||||| |||||    
T  40176840 gtggctattctgttcatggggtatatgacttattgacatcacaggaacaacctcatattcatcaaaatatggagttagtctggcacaaacaggtacctct 40176741  T
Q  114 caaagtttctatccttgcatggcgacttctgagggatcggttacctac 161  Q
     ||||||||  ||||||| |||||  |  |||||||||| ||||||||    
T  40176740 aaaagtttcagtccttgcttggcggttgttgagggatcgtttacctac 40176693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 6e-47; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 15 - 431
Target Start/End: Complemental strand, 51052651 - 51052235
Alignment:
Q  15 tgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctc 114  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| |||||||||||||||    
T  51052651 tgggtattctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctc 51052552  T
Q  115 aaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtg 214  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||   ||| |||| ||||||||  || || || |||| | |||||  ||||    
T  51052551 aaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtg 51052452  T
Q  215 tctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggt 314  Q
    | ||  | || |||   |||||||||||| |||||||||| |||   ||  | |||||  | || |||||| |   ||||||||  ||| | || |||||    
T  51052451 tttctggatgtgggattgtcgaagatgtttctcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggt 51052352  T
Q  315 gggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggtta 414  Q
     || |||||||||| ||| ||||| ||| ||||   ||||||||||||||||||||| || ||||||||||| || ||       ||||||||||||||     
T  51052351 aggtgtcgactctcgatcaacttcagatcattttgagcaatttattaattatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttg 51052252  T
Q  415 ctttgtgtttctgtgtt 431  Q
    ||||||||||| |||||    
T  51052251 ctttgtgtttcggtgtt 51052235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 35541220 - 35541050
Alignment:
Q  15 tgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctc 114  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| |||||||| ||||||    
T  35541220 tgggtattctgttcgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctc 35541121  T
Q  115 aaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtgg 185  Q
    ||||| ||||||||||| |||||||| ||||||||||||||||| |||||| | ||| |||| ||||||||    
T  35541120 aaagtatctatccttgcttggcgactactgagggatcggttacccacaaaacataatttggcaaatcgtgg 35541050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 165
Target Start/End: Original strand, 11909074 - 11909224
Alignment:
Q  15 tgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctc 114  Q
    |||||||| | | ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| |||||||||||||||    
T  11909074 tgggtattctatacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctc 11909173  T
Q  115 aaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaa 165  Q
    ||||| |||||| |||| |||||||||||||||||||||||||||||||||    
T  11909174 aaagtatctatcattgcttggcgacttctgagggatcggttacctacaaaa 11909224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 15 - 165
Target Start/End: Complemental strand, 6050774 - 6050624
Alignment:
Q  15 tgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctc 114  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| |||||||| ||||||    
T  6050774 tgggtattctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctc 6050675  T
Q  115 aaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaa 165  Q
    ||||| ||||||||||| ||||||||  |||||||||||||||||||||||    
T  6050674 aaagtctctatccttgcttggcgactaatgagggatcggttacctacaaaa 6050624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 16917787 - 16917924
Alignment:
Q  24 tgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttct 123  Q
    ||||||||| |  |||||| || ||||||||||||| ||||| | | ||| ||  ||| |||||||  ||||||| |||||||||||| | |||||||||    
T  16917787 tgttcgtggtgcatatgacttgttgacatcacaggaacaacctcttgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttct 16917886  T
Q  124 atccttgcatggcgacttctgagggatcggttacctac 161  Q
    |||||||| ||||||||  |||||||||| ||||||||    
T  16917887 atccttgcttggcgactgttgagggatcgcttacctac 16917924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 291 - 431
Target Start/End: Complemental strand, 6259712 - 6259572
Alignment:
Q  291 ggtgcgggcatggctcggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcga 390  Q
    |||||| |||||||| |||||||| |||||||| |||||||| ||||| ||| |||| ||||||||||||||||| | ||| || ||||||||| | ||     
T  6259712 ggtgcgagcatggctaggagtggtaggggtcgattctcaatcaacttcagatcattttttgcaatttattaattacgtaggttgttcgagagggagacgg 6259613  T
Q  391 tcnnnnnnncacttgatttggttactttgtgtttctgtgtt 431  Q
    ||       || ||||||||||| ||||||||||| |||||    
T  6259612 tcttttttccatttgatttggttgctttgtgtttcggtgtt 6259572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 43388529 - 43388392
Alignment:
Q  24 tgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttct 123  Q
    ||||||||| || |||||| || ||||||||||||| ||||  | | ||| ||  ||| |||||||  ||||||| |||||||||||| | |||||||||    
T  43388529 tgttcgtggtgtatatgacttgttgacatcacaggaacaacttcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttct 43388430  T
Q  124 atccttgcatggcgacttctgagggatcggttacctac 161  Q
    |||||||| |||||| |  |||||||||| ||||||||    
T  43388429 atccttgcttggcgattgttgagggatcgtttacctac 43388392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 431
Target Start/End: Complemental strand, 26059752 - 26059646
Alignment:
Q  325 tctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggttactttgtgttt 424  Q
    |||||||| ||||| ||| |||| ||||||||||||||||||||||| || ||||||||| | || ||       |||||||||||||| ||||||||||    
T  26059752 tctcaatcaacttcagatcattttttgcaatttattaattatgcaggttgttcgagagggtgacggtctttcttccacttgatttggttgctttgtgttt 26059653  T
Q  425 ctgtgtt 431  Q
    | |||||    
T  26059652 cggtgtt 26059646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 425
Target Start/End: Complemental strand, 35540928 - 35540810
Alignment:
Q  307 ggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttga 406  Q
    |||||||| || |||||||||||||| ||||| ||| | ||  ||||||||||| |||||||||| || ||||||||||| || ||       |||||||    
T  35540928 ggagtggtaggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttga 35540829  T
Q  407 tttggttactttgtgtttc 425  Q
    ||||||| |||||||||||    
T  35540828 tttggttgctttgtgtttc 35540810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 291 - 431
Target Start/End: Complemental strand, 4842299 - 4842159
Alignment:
Q  291 ggtgcgggcatggctcggagtggtgggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcga 390  Q
    ||||||||||||||| |||||||| |||||||| |||||||| ||||| ||| |||    |||||||||| |||| ||||| || | |||| |||| ||     
T  4842299 ggtgcgggcatggctaggagtggtaggggtcgaatctcaatcaacttcagatcattgtcagcaatttattcattacgcaggttgtttgagaaggcgacgg 4842200  T
Q  391 tcnnnnnnncacttgatttggttactttgtgtttctgtgtt 431  Q
    ||       |||||||||||||| ||||||||||| |||||    
T  4842199 tctttcttccacttgatttggttgctttgtgtttcggtgtt 4842159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 47623123 - 47623192
Alignment:
Q  92 tttggcacaaacaggttcctctcaaagtttctatccttgcatggcgacttctgagggatcggttacctac 161  Q
    ||||||| |||||||| ||||||||||| ||||| ||||| ||||| ||| ||||||| || ||||||||    
T  47623123 tttggcataaacaggtacctctcaaagtatctattcttgcttggcggcttttgagggaccgcttacctac 47623192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 425
Target Start/End: Complemental strand, 13352180 - 13352075
Alignment:
Q  320 tcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggttactttg 419  Q
    |||||| |||||| ||||| ||| |||| ||| ||||||||||||||||||| || ||||||| ||| || ||       ||||| |||||||| |||||    
T  13352180 tcgactatcaatcaacttcagatcattttttgtaatttattaattatgcaggttgttcgagagagcgacgttcattttttcactttatttggttgctttg 13352081  T
Q  420 tgtttc 425  Q
    ||||||    
T  13352080 tgtttc 13352075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 28 - 371
Target Start/End: Complemental strand, 3410 - 3067
Alignment:
Q  28 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 127  Q
    |||||||||||||| ||||||||||||||||||||||||    | |  | |||| |||||||  ||||||| |||||||||||||| |||||||||||||    
T  3410 cgtggagtctatgatatgctgacatcacaggagcaaccctagttacaccataatatggagttaatttggcataaacaggttcctcttaaagtttctatcc 3311  T
Q  128 ttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcgg 227  Q
    |||| ||| ||||| |||| |||||||||||||| |||| |||| |||| || | |||  ||||||||||||| ||||||| |||||| ||  | || ||    
T  3310 ttgcttggagacttttgagagatcggttacctacgaaaagcaatttggcaaaccatggcattttacctttggaggcgcggttgtgtgtttctggatgtgg 3211  T
Q  228 ggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactct 327  Q
    |  ||| |||||||||| ||||||||| |||   ||    ||||| || || |||||| |   |||||| |||||| | ||||||||||| |||||||||    
T  3210 gaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatggccaatggtgcgagcatggttaggagtggtgggagtcgactct 3111  T
Q  328 caatctacttctgatgatttgttgcaatttattaattatgcagg 371  Q
    || ||||  || ||| |||| ||||||||||| ||||| |||||    
T  3110 cattctatctcagatcattttttgcaatttatcaattacgcagg 3067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 431
Target Start/End: Original strand, 105812 - 106228
Alignment:
Q  15 tgggtattttgttcgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctc 114  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||| ||||   | |  | |||| |||| ||  ||||||| |||||||| ||||||    
T  105812 tgggtattctgtacgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctc 105911  T
Q  115 aaagtttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtg 214  Q
    ||||| ||||||||||| ||||||||  |||||||||||||||||||||||   ||| |||| ||||||||  || || || |||| | |||||  || |    
T  105912 aaagtctctatccttgcttggcgactaatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcg 106011  T
Q  215 tctcaagttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggt 314  Q
    |  |  | || |||   ||||||||||||||||||||||| |||   ||  | |||||  | || |||||| |   |||||||   ||| | ||||||||    
T  106012 ttgctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggt 106111  T
Q  315 gggggtcgactctcaatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcgatcnnnnnnncacttgatttggtta 414  Q
     || |||||||||||||| ||||| ||| | ||  ||||||||||| |||||||||| || ||||||||||| || ||       ||||||||||||||     
T  106112 aggtgtcgactctcaatcaacttcagatcactttgtgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttg 106211  T
Q  415 ctttgtgtttctgtgtt 431  Q
    ||||||||||| |||||    
T  106212 ctttgtgtttcggtgtt 106228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 28 - 389
Target Start/End: Original strand, 11187 - 11548
Alignment:
Q  28 cgtggagtctatgacatgctgacatcacaggagcaaccccctattcttcctaatttggagttggtttggcacaaacaggttcctctcaaagtttctatcc 127  Q
    |||||||||||||||||||||||||||||||||||  |||   | |  | |||| |||| ||  ||||||| |||||||||||||||||||| |||||||    
T  11187 cgtggagtctatgacatgctgacatcacaggagcagacccagctacaccataatctggacttaatttggcataaacaggttcctctcaaagtatctatcc 11286  T
Q  128 ttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaatcgtggtcttttacctttggatgcgcggtcgtgtgtctcaagttgcgg 227  Q
    |||| ||||||||||| |||||||||||||||||||||   ||| |||| || |||||  || || || |||| | |||||  ||||| ||  | || ||    
T  11287 ttgcttggcgacttctcagggatcggttacctacaaaacttaatttggcaaaccgtggcattctatctgtggaggagcggttatgtgtttctggatgtgg 11386  T
Q  228 ggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcgctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactct 327  Q
    |   |||||| |||||  ||||||||| |||   ||  | |||||  | || |||||| |   ||||||||  ||| | |||||||| ||||||||||||    
T  11387 gaatgtcgaaaatgtttttcatttgtttttgtcttgtgcaacttttggagcattatggccgatggtgcgggattggttaggagtggtaggggtcgactct 11486  T
Q  328 caatctacttctgatgatttgttgcaatttattaattatgcagggtgctcgagagggcggcg 389  Q
    ||||| ||||| ||| ||||   |||||||||||||||||| || || ||||||||||||||    
T  11487 caatcaacttcagatcattttgagcaatttattaattatgccggttgttcgagagggcggcg 11548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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