View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19585_low_5 (Length: 423)
Name: NF19585_low_5
Description: NF19585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19585_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 9 - 388
Target Start/End: Original strand, 8115255 - 8115637
Alignment:
| Q |
9 |
gaagaaaatgaagtggtgaaatttgcatttgactaggtaagaaagtacaatgttaatgttaacatgtttactagtactagtactgccttggtcagcatgg |
108 |
Q |
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| T |
8115255 |
gaagaaaatgaagtggtgaaatttgcagttgactaggtaagaaagtacaatgttaatgttaacatgtttactagtactagtactgccttggtcagcatgg |
8115354 |
T |
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| Q |
109 |
agcacacatgtctcacatatctattgtagtttatttatgttacatgtatgtgttgaaagagagcaatccctcaaagtattgacgacataaaagttggatg |
208 |
Q |
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| T |
8115355 |
agcacacatgtctcacatatctattgtagtttatttatgttacatgtatgtgttgaaagagagtaatccctcaaagtattgacgacataaaagttggatg |
8115454 |
T |
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| Q |
209 |
ttatttggacacattaaccacgtgtaacatcatac-aaataatagcac--nnnnnnnnnngttgaaggaaaacaaataatagtacttataatctagttta |
305 |
Q |
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| T |
8115455 |
ttatttggacacattaaccacgtgtaacatcatacaaaataatagtactttttttttttttttgaaggaaaacaaataatagtacttataatctagttta |
8115554 |
T |
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| Q |
306 |
tttttcatctaagttgggagaaaataattaccaaatacaaattgcttttgaatgatatgtttataaggtgtagaatgtaaaat |
388 |
Q |
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| T |
8115555 |
tttttcatctaagttgagagaaaataattaccaaatacaaattgcttttgaatgatatgtttataaggtgtagaatgtaaaat |
8115637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 8113568 - 8113633
Alignment:
| Q |
9 |
gaagaaaatgaagtggtgaaatttgcatttgactaggtaagaaagtacaatgttaatgttaacatg |
74 |
Q |
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| T |
8113568 |
gaagaaaataaagttgtcaaatttgtatttgacttggtaagaaagtactaggttaatgttagcatg |
8113633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 8113696 - 8113750
Alignment:
| Q |
192 |
gacataaaagttggatgttatttggacacattaaccacgtgtaacatcatacaaa |
246 |
Q |
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| T |
8113696 |
gacatagaagttggatgttattaggacacataaaacacatgtgacatcatacaaa |
8113750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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