View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19585_low_6 (Length: 404)
Name: NF19585_low_6
Description: NF19585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19585_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 23 - 386
Target Start/End: Complemental strand, 36083416 - 36083053
Alignment:
| Q |
23 |
tcgctgcatgaagtggaagcaattctagaatacaaatttaacaacatactattgctagaagaggctttcactcactgtacttacggtgctgagaatggct |
122 |
Q |
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| T |
36083416 |
tcgctgcatgaagtggaagcaattctagaatacgaatttaagaacatactattgctagaagaggctttcactcactgtacttacggtgctgagaatggct |
36083317 |
T |
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| Q |
123 |
tatcttatgagcgtttggaatacataggtgattcagttcttcacctaatgataacaacggaacaattttatgcatatccaacgctagcaccaggtcactt |
222 |
Q |
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| T |
36083316 |
tatcttatgagcgtttggaatacataggtgattcagttcttaacctaatgataacaacggaacaatttcatgcatatccaacgctggcaccaggtcactt |
36083217 |
T |
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| Q |
223 |
gacccgtttacgtgctgcaaatgtggacaccgaaaaacttgcacgtgtagccatcaaatatggtttacatcgttatgtgcgtcacaaaaagccactgctt |
322 |
Q |
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| T |
36083216 |
gacccgtttacgtgctgcaaatgtcgacactgaaaaacttgcacgtgtagccatcaaatatggtttacatcgttatgtgcgtcacaaaaagccactgctt |
36083117 |
T |
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| Q |
323 |
ggagacgaagtaagttctctctctcatgttatttatttacttgcagaaaaaatttgttactttt |
386 |
Q |
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| T |
36083116 |
ggagacgaagtaagttctctctctcatgttatttatttacttgcagaaaaaatttgttactttt |
36083053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 27 - 340
Target Start/End: Complemental strand, 36149309 - 36148996
Alignment:
| Q |
27 |
tgcatgaagtggaagcaattctagaatacaaatttaacaacatactattgctagaagaggctttcactcactgtacttacggtgctgagaatggcttatc |
126 |
Q |
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| T |
36149309 |
tgcatgaagttgaagccattcttgaatacgaatttaagaacaaactattactagaagaggctttcactcatggtacttatggtgctgagaatggcttatc |
36149210 |
T |
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| Q |
127 |
ttatgagcgtttggaatacataggtgattcagttcttcacctaatgataacaacggaacaattttatgcatatccaacgctagcaccaggtcacttgacc |
226 |
Q |
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| T |
36149209 |
atatgaacgtttggaatatgtaggtgattcagttcttaacctaatgataacaaaggaacagtttcaagcatatccaaccctagcaccaggtcacttgacc |
36149110 |
T |
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| Q |
227 |
cgtttacgtgctgcaaatgtggacaccgaaaaacttgcacgtgtagccatcaaatatggtttacatcgttatgtgcgtcacaaaaagccactgcttggag |
326 |
Q |
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| T |
36149109 |
cgtttacgtgctgcaaatgtcgacactgaaaaactggcacgtgtggcaatcaagcatggtttgcatcgttatttgcgacacaaaaaacctctacttggag |
36149010 |
T |
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| Q |
327 |
acgaagtaagttct |
340 |
Q |
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|| ||||||||||| |
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| T |
36149009 |
accaagtaagttct |
36148996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 337
Target Start/End: Complemental strand, 36173567 - 36173472
Alignment:
| Q |
242 |
aatgtggacaccgaaaaacttgcacgtgtagccatcaaatatggtttacatcgttatgtgcgtcacaaaaagccactgcttggagacgaagtaagt |
337 |
Q |
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| T |
36173567 |
aatgtggactctgaaaagctggcacgtgtggctatcaaacatggattggatcgttatttgcgtcacaaaaaacctcaacttggagaggaagtaagt |
36173472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 337
Target Start/End: Complemental strand, 36160257 - 36160161
Alignment:
| Q |
241 |
aaatgtggacaccgaaaaacttgcacgtgtagccatcaaatatggtttacatcgttatgtgcgtcacaaaaagccactgcttggagacgaagtaagt |
337 |
Q |
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| T |
36160257 |
aaatgtggactctgaaaagctggcacgagtggctatcaatcatgggttggatcgttatttgcgtcacaaaaagccacaacttggagagcaagtaagt |
36160161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 26527695 - 26527763
Alignment:
| Q |
28 |
gcatgaagtggaagcaattctagaatacaaatttaacaacatactattgctagaagaggctttcactca |
96 |
Q |
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||||||||||||||| ||||| |||||| |||| || |||| |||||| |||||||||||||||||||| |
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| T |
26527695 |
gcatgaagtggaagccattcttgaatacgaattcaagaacaaactattactagaagaggctttcactca |
26527763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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