View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19585_low_7 (Length: 387)

Name: NF19585_low_7
Description: NF19585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19585_low_7
NF19585_low_7
[»] chr1 (8 HSPs)
chr1 (111-381)||(42287117-42287387)
chr1 (249-373)||(12804505-12804629)
chr1 (252-381)||(50788816-50788945)
chr1 (247-370)||(12774948-12775071)
chr1 (255-381)||(28496106-28496232)
chr1 (267-370)||(31644070-31644173)
chr1 (255-373)||(36989348-36989466)
chr1 (254-381)||(4160377-4160504)
[»] chr8 (2 HSPs)
chr8 (253-381)||(5788721-5788849)
chr8 (273-373)||(33186743-33186843)
[»] chr2 (3 HSPs)
chr2 (270-381)||(38895872-38895983)
chr2 (255-381)||(40040789-40040915)
chr2 (255-381)||(42898298-42898424)
[»] chr7 (2 HSPs)
chr7 (254-379)||(40749392-40749517)
chr7 (255-381)||(44150800-44150926)
[»] chr4 (2 HSPs)
chr4 (270-381)||(22085521-22085632)
chr4 (273-374)||(30518166-30518267)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 111 - 381
Target Start/End: Complemental strand, 42287387 - 42287117
Alignment:
Q  111 ttcaataccaaaccatataagtataaccctaacatttggcaaaagtgtagcatatattatgtatatagagtgatgaattcatatttatgaaatataatta 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42287387 ttcaataccaaaccatataagtataaccctaacatttggcaaaagtgtagcatatattatgtatatagagtgatgaattcatatttatgaaatataatta 42287288  T
Q  211 gactaacatcgatgtgaagatataaatataaagatgatgtttgttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtctt 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42287287 gactaacatcgatgtgaagatataaatataaagatgatgtttgttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtctt 42287188  T
Q  311 agaatgtgctttccaatcagattgaacagcatatttctttgagcatttttcacatttccacttcatctcac 381  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42287187 agaatgtgctttccagtcagattgaacagcatatttctttgagcatttttcacatttccacttcttctcac 42287117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 249 - 373
Target Start/End: Original strand, 12804505 - 12804629
Alignment:
Q  249 gtttgttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttct 348  Q
    ||||| ||||| |||||||| |||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12804505 gtttggtaccttgagaagagagtgccacagtcacatctatactccctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttct 12804604  T
Q  349 ttgagcatttttcacatttccactt 373  Q
    | || || |||||||||||||||||    
T  12804605 tagaacacttttcacatttccactt 12804629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 252 - 381
Target Start/End: Original strand, 50788816 - 50788945
Alignment:
Q  252 tgttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttg 351  Q
    |||||||| |||||||| |||||||| ||||| ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||| |    
T  50788816 tgttacctggagaagagagtgccacagtcacacctatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcatacttcttag 50788915  T
Q  352 agcatttttcacatttccacttcatctcac 381  Q
    |||| || ||||| ||||| ||| ||||||    
T  50788916 agcacttatcacacttccatttcttctcac 50788945  T

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Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 247 - 370
Target Start/End: Complemental strand, 12775071 - 12774948
Alignment:
Q  247 atgtttgttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatattt 346  Q
    |||||| |||||| |||||||| |||||||| ||||||||||| ||  ||||||||||||| |||||||| |||||||||||||||||||||||||| ||    
T  12775071 atgtttattacctggagaagagagtgccacagtcacatctatactccttagtaccacaagttttagaatgagctttccaatcagattgaacagcatactt 12774972  T
Q  347 ctttgagcatttttcacatttcca 370  Q
    ||| || || |||||||| |||||    
T  12774971 cttagaacacttttcacacttcca 12774948  T

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Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 255 - 381
Target Start/End: Original strand, 28496106 - 28496232
Alignment:
Q  255 tacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagc 354  Q
    ||||| ||||||||||||||||| |||||| | |||||||| |||||||| || || | ||| ||||||||||||||||| || |||||||| || || |    
T  28496106 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 28496205  T
Q  355 atttttcacatttccacttcatctcac 381  Q
    |||||||||||||||||||| ||||||    
T  28496206 atttttcacatttccacttcttctcac 28496232  T

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Target: chr1; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 267 - 370
Target Start/End: Original strand, 31644070 - 31644173
Alignment:
Q  267 agggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagcatttttcacatt 366  Q
    ||||| |||||||||||| ||||||||| ||||||||| || ||||| || |||||||||||||| |||||||||||  |||||||||| || |||||||    
T  31644070 agggtaccacaatcacatttatattctcgagtaccacaggttttagagtgagctttccaatcagaatgaacagcatagatctttgagcacttatcacatt 31644169  T
Q  367 tcca 370  Q
    ||||    
T  31644170 tcca 31644173  T

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Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 373
Target Start/End: Complemental strand, 36989466 - 36989348
Alignment:
Q  255 tacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagc 354  Q
    ||||| || |||| ||| ||||| |||||| | ||||| || ||||||||  | || ||||| |||||||||||||||||||||||||||||||| || |    
T  36989466 tacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaac 36989367  T
Q  355 atttttcacatttccactt 373  Q
    | || ||||||||||||||    
T  36989366 acttatcacatttccactt 36989348  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 381
Target Start/End: Complemental strand, 4160504 - 4160377
Alignment:
Q  254 ttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgag 353  Q
    |||||| ||||||||||| ||||| |||||  |||| ||| |||| |||||| | || ||||| ||||||||||| || ||||| ||||||   || ||     
T  4160504 ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaa 4160405  T
Q  354 catttttcacatttccacttcatctcac 381  Q
    ||||| ||||| ||||||||| ||||||    
T  4160404 catttctcacacttccacttcttctcac 4160377  T

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Target: chr8 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 253 - 381
Target Start/End: Original strand, 5788721 - 5788849
Alignment:
Q  253 gttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttga 352  Q
    ||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||| || ||||| |||||||||||||||||||||||||||||||||||    
T  5788721 gttaccttgagaagagggttccacagtcacatctatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttga 5788820  T
Q  353 gcatttttcacatttccacttcatctcac 381  Q
     || |||||||||||||||||| ||||||    
T  5788821 acacttttcacatttccacttcttctcac 5788849  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 273 - 373
Target Start/End: Complemental strand, 33186843 - 33186743
Alignment:
Q  273 ccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagcatttttcacatttccact 372  Q
    |||||||||||| |||| ||||||| |||||||   ||||| || |||||||||||||||||||||||||||||||| || ||||| |||||||||||||    
T  33186843 ccacaatcacatttatactctctagaaccacaaactttagagtgagctttccaatcagattgaacagcatatttcttagaacatttctcacatttccact 33186744  T
Q  373 t 373  Q
    |    
T  33186743 t 33186743  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 270 - 381
Target Start/End: Original strand, 38895872 - 38895983
Alignment:
Q  270 gtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagcatttttcacatttcc 369  Q
    ||||||||||||||| | ||||||||||||||||||||||| || |||||||||||||| ||||||||||||||    |||||||| || ||||| ||||    
T  38895872 gtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagcacttctcacacttcc 38895971  T
Q  370 acttcatctcac 381  Q
    ||||| ||||||    
T  38895972 acttcttctcac 38895983  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 255 - 381
Target Start/End: Complemental strand, 40040915 - 40040789
Alignment:
Q  255 tacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagc 354  Q
    ||||| ||||| || ||||||||||||||||| || ||| |||| |||||| |||||  ||| || ||||||||||||||||| ||||||||||| || |    
T  40040915 tacctggagaatagtgtgccacaatcacatctgtactctttagtgccacaaatcttactatgagccttccaatcagattgaactgcatatttcttagaac 40040816  T
Q  355 atttttcacatttccacttcatctcac 381  Q
    | || ||||| ||||||||| ||||||    
T  40040815 acttatcacacttccacttcttctcac 40040789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 255 - 381
Target Start/End: Complemental strand, 42898424 - 42898298
Alignment:
Q  255 tacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagc 354  Q
    ||||| ||||||||||| ||||| |||||||| |||||||| || ||||| || || || || |||||||| || |||||||| ||||| ||||| ||||    
T  42898424 taccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagc 42898325  T
Q  355 atttttcacatttccacttcatctcac 381  Q
    | || ||||||||||||||| ||||||    
T  42898324 acttgtcacatttccacttcttctcac 42898298  T

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Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 254 - 379
Target Start/End: Complemental strand, 40749517 - 40749392
Alignment:
Q  254 ttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgag 353  Q
    |||||| |||||||| || |||||||||||  |||||||||||||||||||||| ||||  || ||||||||||||||||| || ||||||||||| ||     
T  40749517 ttaccttgagaagagtgtaccacaatcacacttatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcatatttcttggaa 40749418  T
Q  354 catttttcacatttccacttcatctc 379  Q
    || || ||||| ||||| ||| ||||    
T  40749417 cacttatcacacttccatttcttctc 40749392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 381
Target Start/End: Original strand, 44150800 - 44150926
Alignment:
Q  255 tacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagc 354  Q
    |||||||| || | ||| |||||||||||| | ||||| |||||||||||||| ||    || || |||||||| ||||||||||||||| | || ||||    
T  44150800 tacctagaaaatatggttccacaatcacatttgtattccctagtaccacaagttttctggtgagccttccaatctgattgaacagcatatcttttagagc 44150899  T
Q  355 atttttcacatttccacttcatctcac 381  Q
    | || ||||||||||| ||| ||||||    
T  44150900 acttgtcacatttccatttcttctcac 44150926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 270 - 381
Target Start/End: Original strand, 22085521 - 22085632
Alignment:
Q  270 gtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagcatttttcacatttcc 369  Q
    ||||||||||||||| | || |||||||| |||||| ||||   ||| |||||||||||||||||||| ||||||||||| || || |||||||| ||||    
T  22085521 gtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaacacttttcacacttcc 22085620  T
Q  370 acttcatctcac 381  Q
    ||||| ||||||    
T  22085621 acttcttctcac 22085632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 374
Target Start/End: Original strand, 30518166 - 30518267
Alignment:
Q  273 ccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccaatcagattgaacagcatatttctttgagcatttttcacatttccact 372  Q
    ||||| |||||| | ||||||||||||||||| || || || || ||||||||||| || |||||||||||    |||||||| || ||||| |||||||    
T  30518166 ccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagcacttctcacacttccact 30518265  T
Q  373 tc 374  Q
    ||    
T  30518266 tc 30518267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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