View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19586_high_18 (Length: 234)
Name: NF19586_high_18
Description: NF19586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19586_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 11078653 - 11078841
Alignment:
| Q |
18 |
agtatcatgatatccgtgaattcatatatttattgcagaaaggagcaatgaaactgcatagagagcgaagaaaggttgattattccttggaaggatattc |
117 |
Q |
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| T |
11078653 |
agtatcatgatatcagtgaattcatatatttattgcagaaaggagcaatgaaactgcatagagagcaaagaaaggttgatt---ccttggaaggatattc |
11078749 |
T |
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| Q |
118 |
agaaggacaaatatcagagcttaaaaagcatatgcagcaaacatatgaggagcaactaaagcatattactgagatggtaccttttgtgtcta |
209 |
Q |
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| T |
11078750 |
agaaggacaaatatcagagcttaaaaagcatatgcagcaaacatatgaggagcagctaaaacatattaccgagatggtaccttttctgtcta |
11078841 |
T |
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Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 11090021 - 11090215
Alignment:
| Q |
18 |
agtatcatgatatccgtgaattcatatatttattgcagaaaggagcaatgaaactgcatagagagcgaagaaaggttgattattcct---tggaaggata |
114 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| || | ||||| |||||||| | |||||||||| |
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| T |
11090021 |
agtatcatgatataagtgaattcatatattgattgcagaaaggagcaatgaaactagatagcgaccaaagaatggttgattccttggaactggaaggata |
11090120 |
T |
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| Q |
115 |
ttcagaaggacaaatatcagagcttaaaaagcatatgcagcaaacatatgaggagcaactaaagcatattactgagatggtaccttttgtgtcta |
209 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||| |||||||||| || ||||| ||||||||||||||||||| ||||||||||| |
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| T |
11090121 |
ttcagaaggaaaaatatcagagcttaaaaagcatatgaagcaggcatatgaggatcagctaaaacatattactgagatggtactttttgtgtcta |
11090215 |
T |
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