View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19586_high_5 (Length: 699)
Name: NF19586_high_5
Description: NF19586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19586_high_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 154 - 635
Target Start/End: Complemental strand, 7269609 - 7269128
Alignment:
| Q |
154 |
gctcttccatattatcttcatgggaaaccgaaacaaaatatgccgattccaagtactaatataaaaactattccaattaaggctaatactaggcctaaga |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
7269609 |
gctcttccatattatcttcatgggaaaccgaaacaaaatattccaattccaaatactaatataaaaactattccgagtaaggctaatactaggcctaaga |
7269510 |
T |
|
| Q |
254 |
aattcacccaagaaaaataaataaaaactaggcctaaacataatggaccagatcatcccctctaaacctgaactggcaacatatctttctctgccattat |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7269509 |
aattcacccaagaaaaataaataaaaactaggcctaaacataatggaccagatcatcccctctaaacctgaactggcaacatatctttctctgccattat |
7269410 |
T |
|
| Q |
354 |
tcaagaggacacatgctctttatgtatctacta----ttcttagacacatgttgaacagaagttaactaccgttcaatactttttagattggttcagata |
449 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7269409 |
tcaagaggacacctgctctttatgtatctactaattgttcttagacacttgttgaacaaaagttaactaccgttcaatactttttagattggttcagata |
7269310 |
T |
|
| Q |
450 |
ctttttaagttgattcacgcaatggcggagtccttcatggattgagatggaccacggcccacccaaagaaatttgaaaaattaacaaccatatgcccatt |
549 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
7269309 |
ctttttaagttgattcacgcaatggcggagtccttcatgaattgaggtggaccacggctcacccaaagaaatttgaaaaattaacagccatatgtccatt |
7269210 |
T |
|
| Q |
550 |
ccgtgaggttttaaacaagctagccaatatcaagaagtcgtaccataataagacactaattcaagagacgtatatgtacgccaaag |
635 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7269209 |
ctgtgaggttttaaacaagctagccaatatcaaaaagtcgtac----ataagacactaattcaagagacgtatatgtacgcaaaag |
7269128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 69
Target Start/End: Complemental strand, 7269732 - 7269699
Alignment:
| Q |
36 |
ttactattactgacaagaatttaatgtttaacat |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
7269732 |
ttactattactgacaagaatttaatgtttaacat |
7269699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University