View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19586_high_6 (Length: 616)
Name: NF19586_high_6
Description: NF19586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19586_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 17 - 600
Target Start/End: Original strand, 590664 - 591247
Alignment:
| Q |
17 |
atgaaatggtggctacatgtgaaaaccaactcggccggtgacacagattatacatgtcaacatctaaatacattggagtctaagcccgacgcttttagta |
116 |
Q |
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| T |
590664 |
atgaaatggtggctacatgtgaaaaccaacttggccggtgacacagattatacatgtcaacatctaaatacattggagtctaagctcgacgcttttagta |
590763 |
T |
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| Q |
117 |
cccgacttcatggtgacaatgtcagtatcgggagtgatcaaactgtcaaaaacttcgatgctgtttcatttgttggaaatgctgctactgcagctataga |
216 |
Q |
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| T |
590764 |
cccgacttcatggtgacaatgtcagtatcgggagtgatcaaactgtcaaaaacttcgatgctgtttcatttgttggaaatgctgctactgcagctataga |
590863 |
T |
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| Q |
217 |
gcagcaatggaatgtctatccaaaatatatgaagaacagtgatactcgaacgtcgaaaattgaggcttcattgaacagtgacttgtatttaacacctaag |
316 |
Q |
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| T |
590864 |
gcagcaatggaatgtctatccaaaatatatgaagaatagtgatactcgaacgtcgaaaattgaggcttcattgaacagtgacttgtatttaacacctaag |
590963 |
T |
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| Q |
317 |
aagaaaaatgaaggggaattctggttttcagatgatgctactagtttcttgatctcggaacattgtaaaagtacatcgtctgattttgaaccacattggt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
590964 |
aagaaaaatgaaggggaattctggttttcagatgatgctactagtttcttgatctcggaacattgtaaaagtacatcgtctgattttgaaccacattggt |
591063 |
T |
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| Q |
417 |
tgggagctgaaaaatctcagccttggtggcgcactacaggaaaagacgatttggcttccttggttgctaagaaatcatttgagtatgtcgagaactgcga |
516 |
Q |
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| T |
591064 |
tgggagctgaaaaatctcagccttggtggcgcactacaggaaaagacgatttggcttccttggttgctaagaaatcatttgagtatgtcgagaactgcga |
591163 |
T |
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| Q |
517 |
tctcccagagccaaacattaagccttttaggaaaatacatactcttcagccaagagaaactgacaaggaggagaatcaagtgtc |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
591164 |
tctcccagagccaaacattaagccttttaggaaaatacatactcttcagccaagagaaactgacaaggaggagaatcaagtgtc |
591247 |
T |
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