View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19586_low_12 (Length: 364)
Name: NF19586_low_12
Description: NF19586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19586_low_12 |
 | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 20 - 335
Target Start/End: Complemental strand, 40464773 - 40464458
Alignment:
| Q |
20 |
agaccctactcatatcactctctcactcacacgcgcaaaagctgtttataactttactattgtttcagtgataatttggtatatactatgctgcagctta |
119 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40464773 |
agaccctactcatatcactctctccctcacacgcgcaaaagctgtttataactttactattgtttcagtgataatttgttatatactatgctgcagctta |
40464674 |
T |
|
| Q |
120 |
ctggtaaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcattaccaggttg |
219 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40464673 |
ctggtgaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcattaccaggttg |
40464574 |
T |
|
| Q |
220 |
gtacaaccttctttctagctccaatatttttctcatggatggtgtggaatttaaattccaataggtgattcattaaggcacatgtcaaaagaattaccga |
319 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40464573 |
gtacaaccttctttctagctcaaatatttttctcatggatggtgtggaatttaaattccaataggtgattcattaaggcacatgtcaaaagaattaccgg |
40464474 |
T |
|
| Q |
320 |
tcgaactagcgagtct |
335 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
40464473 |
tcaaactagcgagtct |
40464458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 111 - 218
Target Start/End: Original strand, 77694 - 77801
Alignment:
| Q |
111 |
tgcagcttactggtaaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcatt |
210 |
Q |
| |
|
||||||| |||||| |||||||||||||||| || || || ||||| |||||||||||||||||||| ||| | | | |||| ||||| ||||| || || |
|
|
| T |
77694 |
tgcagctaactggtgaaacagtaggagaagttaaggctgttgctgatatgcatcaaaggaaagctgagatggccaaacattcagatgcttttattgcctt |
77793 |
T |
|
| Q |
211 |
accaggtt |
218 |
Q |
| |
|
|||||||| |
|
|
| T |
77794 |
accaggtt |
77801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 111 - 218
Target Start/End: Complemental strand, 40888590 - 40888483
Alignment:
| Q |
111 |
tgcagcttactggtaaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcatt |
210 |
Q |
| |
|
||||||| |||||| |||||||||||||||| || || || ||||| |||||||||||||||||||| ||| | | | |||| ||||| ||||| || || |
|
|
| T |
40888590 |
tgcagctaactggtgaaacagtaggagaagttaaggctgttgctgatatgcatcaaaggaaagctgagatggccaaacattcagatgcttttattgcctt |
40888491 |
T |
|
| Q |
211 |
accaggtt |
218 |
Q |
| |
|
|||||||| |
|
|
| T |
40888490 |
accaggtt |
40888483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 128 - 221
Target Start/End: Original strand, 21626639 - 21626732
Alignment:
| Q |
128 |
acagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcattaccaggttggt |
221 |
Q |
| |
|
||||| ||||||||||| |||||||| | |||||||||||| |||||||| ||| ||| |||||||||| ||||| || ||||||||||||| |
|
|
| T |
21626639 |
acagtgggagaagtgaaggcagtagcaggcatgcatcaaagaaaagctgagatggctaagcattctgatgcttttattgccttaccaggttggt |
21626732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 218
Target Start/End: Complemental strand, 28270827 - 28270720
Alignment:
| Q |
111 |
tgcagcttactggtaaaacagtaggagaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctagaaattctgatgcctttatagcatt |
210 |
Q |
| |
|
||||||| |||||| |||| || |||||||| ||||| ||||| || |||||||||||||| || || ||| ||| |||| ||||| ||||| || || |
|
|
| T |
28270827 |
tgcagctaactggtgaaacggtgggagaagtaaaagctgtagcagatatgcatcaaaggaaggcagagatggctaagcattcagatgcttttattgcctt |
28270728 |
T |
|
| Q |
211 |
accaggtt |
218 |
Q |
| |
|
|||||||| |
|
|
| T |
28270727 |
accaggtt |
28270720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 25026961 - 25026912
Alignment:
| Q |
137 |
gaagtgaaagcagtagctgacatgcatcaaaggaaagctgaaatgtctag |
186 |
Q |
| |
|
||||||| ||| ||| |||| |||||||||||||||||||||||| |||| |
|
|
| T |
25026961 |
gaagtgagagctgtatctgatatgcatcaaaggaaagctgaaatggctag |
25026912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University