View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19586_low_14 (Length: 313)

Name: NF19586_low_14
Description: NF19586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19586_low_14
NF19586_low_14
[»] chr7 (1 HSPs)
chr7 (1-296)||(42290461-42290746)


Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 42290746 - 42290461
Alignment:
Q  1 aatgaaagtttgagaggcagcacatgatatgatttatttaatagaaaatttataacaatgaatacgattgaacagttttttgtcgtgaagcatttaatga 100  Q
    ||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42290746 aatgaaagtttgagaggcagcacatgatatgattta----atagaaaatttataacaatgaatacgattgaacagttttttgtcgtgaagcatttaatga 42290651  T
Q  101 ttttaaagcagaaaagaaatgtacctgttgtggcgatgagtcatcatgatcgtgaggaacaaaaatggttttacgaggcggtggtcgattgtagcaataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42290650 ttttaaagcagaaaagaaatgtacctgttgtggcgatgagtcatcatgatcgtgaggaacaaaaatggttttacgaggcggtggtcgattgtagcaataa 42290551  T
Q  201 acggcgtcaaatcctaagcaatagcataccaaaatcaagaaagccaagcctggaaaatgtgttcccttgaatctcattttgttttcttcaaatttt 296  Q
    ||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42290550 acggcgtcaaatccta------agcataccaaaatcaagaaagccaagcctggaaaatgtgttcccttgaatctcattttgttttcttcaaatttt 42290461  T

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