View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19586_low_17 (Length: 242)
Name: NF19586_low_17
Description: NF19586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19586_low_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 2926048 - 2926273
Alignment:
| Q |
1 |
ttgaggtatctggcatcgcagccgcattttcctgcaatttgttgtttgcaaggtaaaagcataatcaggagatgcattaactaatatatttgctaaagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2926048 |
ttgaggtatctggcatcgcagccgcattttcctgcaatttgttgtttgcaaggtaaaagcataatcaggagatgcattaactaatatatttgctaaagtt |
2926147 |
T |
|
| Q |
101 |
ttattttgatataccatacgtgataaatgttggtctagtgaaccattgcagacatattcataaacaagaagcctatggtttccttcagaacatgatccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2926148 |
ttattttgatataccatacgtgataaatgttggtctagtgaaccattgcagacatattcataaacaagaagcctatggtttccttcagaacatgatccaa |
2926247 |
T |
|
| Q |
201 |
gcaacatgacaatattttcatgtctt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
2926248 |
gcaacatgacaatattttcatgtctt |
2926273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 226
Target Start/End: Original strand, 2971061 - 2971166
Alignment:
| Q |
121 |
tgataaatgttggtctagtgaaccattgcagacatattcataaacaagaagcctatggtttccttcagaacatgatccaagcaacatgacaatattttca |
220 |
Q |
| |
|
||||| |||||| || ||||| |||||||||||||| |||||||||||||| | || |||||||| |||||||| || | | |||||||| ||| ||| |
|
|
| T |
2971061 |
tgatagatgttgatcaagtgagccattgcagacatactcataaacaagaagtcgattatttccttctgaacatgaacctaaaagcatgacaacattctca |
2971160 |
T |
|
| Q |
221 |
tgtctt |
226 |
Q |
| |
|
|||||| |
|
|
| T |
2971161 |
tgtctt |
2971166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 223
Target Start/End: Complemental strand, 16329895 - 16329789
Alignment:
| Q |
117 |
tacgtgataaatgttggtctagtgaaccattgcagacatattcataaacaagaagcctatggtttccttcagaacatgatccaagcaacatgacaatatt |
216 |
Q |
| |
|
|||| ||||||||||| || ||||| |||||||| ||| ||||||| ||||||| || | ||||| || ||||| ||||| |||| |||||| | ||| |
|
|
| T |
16329895 |
tacgcgataaatgttgatcaagtgagccattgcaaacaaattcatatacaagaaatctgttctttccctccgaacaagatcctagcagcatgaccacatt |
16329796 |
T |
|
| Q |
217 |
ttcatgt |
223 |
Q |
| |
|
||||||| |
|
|
| T |
16329795 |
ttcatgt |
16329789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University