View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19586_low_2 (Length: 955)
Name: NF19586_low_2
Description: NF19586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19586_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 309 - 645
Target Start/End: Complemental strand, 33251103 - 33250767
Alignment:
| Q |
309 |
gagcagtgctatctgatcccaagaaaagaagtatgtacgatgctggcttgtatgatcctcaagaggaagaagttgaggtaattatgtgcttatggaaaat |
408 |
Q |
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| T |
33251103 |
gagcagtgctatctgatcccaagaaaagaagtatgtacgatgctggcttgtatgatcctcaagaggaagaagttgaggtaattatgtgcttatggaaatt |
33251004 |
T |
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| Q |
409 |
tttcctgtagttttccttgaagattgtttcttttttgtttattagtttgttatattattatggttctgaaaaacatgccttgtttctaattttaggattt |
508 |
Q |
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| T |
33251003 |
tttcctgtagtttttcttgaagattgtttcgtttttgtttattagtttgttatattattatggtgctgaaagacatgcattgtttctaattttaggattt |
33250904 |
T |
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| Q |
509 |
ttctgattttgtggacgaaatggtgtcccttatggctgaagttaggcgagaggtatggttcttttgaccatttcctataactaatcctttagaaaagttt |
608 |
Q |
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| T |
33250903 |
ttctgattttgtggacgaaatggtgtcccttatggctgaagttaggcgagaggtatggttcttttgaccacttcctataactaatcctttagaaaagttt |
33250804 |
T |
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| Q |
609 |
gatcttggtaattatttcatagctccaattttgaatt |
645 |
Q |
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| T |
33250803 |
gatcttggtaattatttcatagctccaattttgaatt |
33250767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 33251405 - 33251205
Alignment:
| Q |
18 |
ataggaagcttgctatggttagttaattatagttgctttctttttgggaatttgcattgttattcaaatttgaatgtgaggtgctgattgtgaatttcaa |
117 |
Q |
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| T |
33251405 |
ataggaagcttgctatggttagttaattatagttgctttctttttgggaatttgcattgttattcaaatttgaatgtgaggtgctgattgtgaatttcaa |
33251306 |
T |
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| Q |
118 |
tgcatgcagcaatggcatccagataggtggacaagaacaccttctttacttagcgaagccaagtgtaaatttcagaacattcaagaagcttattcaggta |
217 |
Q |
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| T |
33251305 |
tgcatgcagcaatggcatccagataggtggacaagaacaccttctttacttagcgaagccaagtgtaaatttcagaacattcaagaagcttattcaggta |
33251206 |
T |
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| Q |
218 |
t |
218 |
Q |
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| T |
33251205 |
t |
33251205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 181; E-Value: 3e-97
Query Start/End: Original strand, 750 - 938
Target Start/End: Complemental strand, 33250688 - 33250500
Alignment:
| Q |
750 |
catgtcacaaaaacattcttgcaggagaaggtttatggtttggaggagttgcaggacatgttcatggaaatggctgaaggattccagagtccttcaatgt |
849 |
Q |
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| T |
33250688 |
catgtcacaaaaacattcttgcaggagaaggtttatggtttggaggagttgcaggacatgttcatggaaatggctgaaggattccagagtccttcagtgt |
33250589 |
T |
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| Q |
850 |
attgtgggacaccatcggtggttgatgaatcctttgctaacagaggaagtgttttgacacgataattgataatataagccggcccatat |
938 |
Q |
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| T |
33250588 |
attgtgggacaccatcggtggttgatgaatcctttgctaacagaggaagtgttttgacacgataattgataatataagccgggccatat |
33250500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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