View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19586_low_3 (Length: 877)
Name: NF19586_low_3
Description: NF19586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19586_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-151; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 518 - 860
Target Start/End: Original strand, 32620922 - 32621264
Alignment:
| Q |
518 |
tcccctattgtgtccagccattgtgattgtgcaggaaagacgacgtggcctatccannnnnnngttcttaagatatttctactttcattcttg-tccaaa |
616 |
Q |
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| T |
32620922 |
tcccctattgtgtccagccattgtgattgtgcaggaaagacg---tggcctatccatttttctgttcttaagatatttctactttcattcttggtccaaa |
32621018 |
T |
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| Q |
617 |
cctctccaaaa--ccccttaattttcatctctctctgtattatcctctccaaagattcaaactttccaatgtcaccttaaaacccatctcctcaattcaa |
714 |
Q |
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| T |
32621019 |
cctctccgaaaatccccttaattttcatctctctctgtattatcctctccaaagattcaaactttccaatgtcaccttaaaacccatctcctcaattcaa |
32621118 |
T |
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| Q |
715 |
tgacttctcttctcccatctccacaactcatttccacaccccccttcaccaaactcacctcccccctaaaaccatgtcacctcttcttcctcaaccaccc |
814 |
Q |
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| T |
32621119 |
tgacttctcttctcccatctccacaactcatttccacacaccccttcaccaaactcacctcccccctaaaaccacgtcacctcttcttcctcaaccaccc |
32621218 |
T |
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| Q |
815 |
tttacaccacaaaaccattaaaaaattactttttacaccacccttt |
860 |
Q |
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| T |
32621219 |
ttttcaccacaaaaccattaaaaaactactttttacaccacccttt |
32621264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 32620410 - 32620634
Alignment:
| Q |
12 |
atcatcacgttagtgaggaactttttcccctctatgccacatttttaaaaaatcatatatgttttgagaaatgtactttcaaacaatattttaattcatg |
111 |
Q |
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| T |
32620410 |
atcatcacgttagtgaggaactttttcccctctatgccacatttttaaagaatcatacatgttttgataaatgtactttcaaacaatattttaattcatg |
32620509 |
T |
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| Q |
112 |
gctaatacaagtaaatcatataacatgttattgactatactcattagtgtcctgag---acaatagttaagaagattaatacataacttttgtaatggaa |
208 |
Q |
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| T |
32620510 |
gctattacaagtaaatcatataacatgttattgaatatactcattagtgtcctgagacaacaatagttaaggagattaatacataaattttgtattggaa |
32620609 |
T |
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| Q |
209 |
attgttaaaaagtggtgtgttcaac |
233 |
Q |
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| T |
32620610 |
attgttaaaaagtagcgtgttcaac |
32620634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 282 - 442
Target Start/End: Original strand, 32620685 - 32620846
Alignment:
| Q |
282 |
actttcttaactagtgcctccgagacaagtaattcggaagatttaactcaactaacaatgctgat-ttaagctaaacaccgtcacatgtgttcaaacttt |
380 |
Q |
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| T |
32620685 |
actttcttaactagtgcttccgagacaaataattcggaagatctaactcaactaacaatgctgatattaagctaaacaccgtcacatgtgttcaaacttt |
32620784 |
T |
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| Q |
381 |
agatctcacaattttgtacgtaagtttttgatgatgcttgttactttgtctcgtctcaagac |
442 |
Q |
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| T |
32620785 |
agatctcaccgttttgtacataagttttagatgatgctcgttactttgtctcgtctcaagac |
32620846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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