View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19586_low_4 (Length: 750)
Name: NF19586_low_4
Description: NF19586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19586_low_4 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 543; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 19 - 737
Target Start/End: Original strand, 2426947 - 2427675
Alignment:
| Q |
19 |
gtagttcaacccaacaattgtttctaagtatagtaaaacgttactaggacgaatcgttcagaagttctgagtttgatggaagaattcttgattatattat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
2426947 |
gtagttcaacccaacaattgtttctaagtatagtaaagcgttactaggacgaatcgttcaaaagttttgagtttgatggaagaattcttgattatattat |
2427046 |
T |
|
| Q |
119 |
actcacctcacaaccaaactctaaattataagaacttcgttcccatgagaaatggagggttaaaacaacnnnnnnn-cattatggttgaaatagatgctt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
2427047 |
actcacctcacaaccaaactctaaattataagaacttggttcccatgagaaatggagggttaatacaacaaaaaaaacattatggttgaaatagatgctt |
2427146 |
T |
|
| Q |
218 |
acaattataaaacatgggagtggatcacaatcaacctcatataattaacaattatattttgctt---------------aattatatgttaatgtaattc |
302 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2427147 |
acaattacaaaacatgggagtggatcacaatcaacctcatataattaacaattatattttgcttttgctttgcttcattaattatatgttaatgtaattc |
2427246 |
T |
|
| Q |
303 |
tttttcctgatttatataagtaaatttgcacacgtgacctatttcaatannnnnnnagtgtgttttctcaaaacacttctcttttatcatgacnnnnnnn |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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|
| T |
2427247 |
tttttcctgatttatataagtaaatttgcacacgtgacctatttcaatattttattagtgtgttttttcaaaacacttctcttttatcatgacttttttt |
2427346 |
T |
|
| Q |
403 |
gataccaatagaaatttgttagacaaaaatgcataacaatgtgtggccagttttatttgatgtacatgcacttgactttgagacagtacaaacacaaaaa |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2427347 |
gataccaatagaaatttgttagacaaaaatgcataacaatgtgtggccagttttatttgatgtacatgcacttgactttgagacagtacaaacacaaaaa |
2427446 |
T |
|
| Q |
503 |
ccacacgactccaccaactctgaagtgaacacatttgtgtcacaactccttcttcattcatcacttttctgttgtaattgtaaactgagtgaactaaagc |
602 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| | |
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|
| T |
2427447 |
ccacacgactccaccaactctgaagtgaacacatttgtgtcacaactccttcttcattcattacttttctg------ttgtaaactgagtgaactaaacc |
2427540 |
T |
|
| Q |
603 |
caattcctaacatggcgcaagtgagaaacaagcaagtgattttgagagaccatgtgtctggttttcctaaggaatcagacatgaatgctgttgatagtac |
702 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2427541 |
caattcctaacatggcgcaagtgagaaacaagcaagtgattttgagagactatgtgtctggttttcctaaggaatcagacatgaatgttgttgatagtac |
2427640 |
T |
|
| Q |
703 |
aattactctcaaccttccacaaggttccaatgatg |
737 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2427641 |
aattattctcaaccttccacaaggttccaatgatg |
2427675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 19 - 737
Target Start/End: Original strand, 1457236 - 1457968
Alignment:
| Q |
19 |
gtagttcaacccaacaattgtttctaagtatagtaaaacgttactaggacgaatcgttcagaagttctgagtttgatggaagaattcttgattatattat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||| | ||||||| |
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|
| T |
1457236 |
gtagttcaacccaacaattgtttctaagtacagtaaagcgttactaggacgaattgttcagaagttatgagtttgatggaagaattcttggtcatattat |
1457335 |
T |
|
| Q |
119 |
actcacctcacaaccaaactctaaattataagaacttcgttcccatgagaaatggagggttaaaacaacnnnnnnncattatggttgaaatagatgctta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |
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|
| T |
1457336 |
actcacctcacaaccaaactctaaattataagaacttggttcccatgagaaatggagggttaatacaacaaaaaaacattatggttgaaatagatgttta |
1457435 |
T |
|
| Q |
219 |
caattataaaacatgggagtggatcacaatcaacctcatataattaacaattatattttgctt---------------aattatatgttaatgtaattct |
303 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
1457436 |
caattacaaaacatgggagtggatcacaatcaacctcatataattaacaattatattttgcttttgctttgcttcattaattatatgttaatgtaattct |
1457535 |
T |
|
| Q |
304 |
ttttcctgatttatataagtaaatttgcacacgtgacctatttcaatannnnnnnagtgtgttttctcaaaacacttctcttttatcatgacnnnnnnng |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| | |
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|
| T |
1457536 |
ttttcctgatttatataagtaaatttgcacacgtgacctatttcaatatttttttagtgtgttttttcaaaacacttctcttttatcatgactttttttg |
1457635 |
T |
|
| Q |
404 |
ataccaatagaaatttgttagacaaaaatgcataacaatgtgtggccagttttatttgatgtacatgcacttgactttgagaca----------gtacaa |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1457636 |
ataccaatagaaatttgttagacaaaaatgcttaaca-----------gttttatttgatgtacatgcacttgactttgagacacacagcgacagtacaa |
1457724 |
T |
|
| Q |
494 |
acacaaaaaccacacgactccaccaactctgaagtgaacacatttgtgtcacaactccttcttcattcatcacttttctgttgtaattgtaaactgagtg |
593 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1457725 |
acacaaaaaccacacgactccaccaactctgaagtgaacacatttgtgtcacaactccttcttcattcatcacttttctgttgtaattgtaaactgagtg |
1457824 |
T |
|
| Q |
594 |
aactaaagccaattcctaacatggcgcaagtgagaaacaagcaagtgattttgagagaccatgtgtctggttttcctaaggaatcagacatgaatgctgt |
693 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
1457825 |
aactaaacccaattcctaacatggcgcaagtgagaaacaagcaagtgattttgagagactatgtgtctggttttcctaaggaatcagacatgaatgttgt |
1457924 |
T |
|
| Q |
694 |
tgatagtacaattactctcaaccttccacaaggttccaatgatg |
737 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1457925 |
tgatagtacaattattctcaaccttccacaaggttccaatgatg |
1457968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 603 - 737
Target Start/End: Complemental strand, 2499058 - 2498924
Alignment:
| Q |
603 |
caattcctaacatggcgcaagtgagaaacaagcaagtgattttgagagaccatgtgtctggttttcctaaggaatcagacatgaatgctgttgatagtac |
702 |
Q |
| |
|
||||||| |||||||| |||||||| ||||||||||||||| ||| ||| |||| |||||||||||||| |||||||||||||| | |||| |||| |
|
|
| T |
2499058 |
caattccaaacatggcacaagtgaggaacaagcaagtgattctgaaggactatgtatctggttttcctaaagaatcagacatgaacattattgaaagtat |
2498959 |
T |
|
| Q |
703 |
aattactctcaaccttccacaaggttccaatgatg |
737 |
Q |
| |
|
||||||||| || |||||||||||||||||||||| |
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|
| T |
2498958 |
aattactcttaagcttccacaaggttccaatgatg |
2498924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 603 - 737
Target Start/End: Original strand, 2430795 - 2430929
Alignment:
| Q |
603 |
caattcctaacatggcgcaagtgagaaacaagcaagtgattttgagagaccatgtgtctggttttcctaaggaatcagacatgaatgctgttgatagtac |
702 |
Q |
| |
|
|||||||| | |||||| || |||| ||||||||||||||| ||| ||| ||||||||||||||||||| ||||||||||||||| ||| || ||||| |
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|
| T |
2430795 |
caattcctgagatggcggaaatgaggaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacatgaatattgtagacagtac |
2430894 |
T |
|
| Q |
703 |
aattactctcaaccttccacaaggttccaatgatg |
737 |
Q |
| |
|
|| |||||||| |||||||||||||| ||||||| |
|
|
| T |
2430895 |
tataactctcaagcttccacaaggttcaaatgatg |
2430929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 603 - 737
Target Start/End: Original strand, 2434375 - 2434509
Alignment:
| Q |
603 |
caattcctaacatggcgcaagtgagaaacaagcaagtgattttgagagaccatgtgtctggttttcctaaggaatcagacatgaatgctgttgatagtac |
702 |
Q |
| |
|
|||||||| | |||||| ||||||| ||||||||||||||| ||| ||| ||||||||||||||||||| ||||||||| | || |||||| ||||| |
|
|
| T |
2434375 |
caattcctgagatggcggaagtgaggaacaagcaagtgattctgaaggactatgtgtctggttttcctaaagaatcagacctcaacattgttgacagtac |
2434474 |
T |
|
| Q |
703 |
aattactctcaaccttccacaaggttccaatgatg |
737 |
Q |
| |
|
|| || ||||| |||||||||||||||||||||| |
|
|
| T |
2434475 |
cataacactcaagcttccacaaggttccaatgatg |
2434509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 629 - 737
Target Start/End: Complemental strand, 2519369 - 2519261
Alignment:
| Q |
629 |
aacaagcaagtgattttgagagaccatgtgtctggttttcctaaggaatcagacatgaatgctgttgatagtacaattactctcaaccttccacaaggtt |
728 |
Q |
| |
|
||||||||||| ||| ||| | || ||||||||||||||||||| |||||||||||||| |||| ||||| || |||||||| |||||||||| || |
|
|
| T |
2519369 |
aacaagcaagtaattctgaaacactatgtgtctggttttcctaaagaatcagacatgaacatcattgacagtaccataactctcaagcttccacaagctt |
2519270 |
T |
|
| Q |
729 |
ccaatgatg |
737 |
Q |
| |
|
||||||||| |
|
|
| T |
2519269 |
ccaatgatg |
2519261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 629 - 736
Target Start/End: Complemental strand, 2507567 - 2507460
Alignment:
| Q |
629 |
aacaagcaagtgattttgagagaccatgtgtctggttttcctaaggaatcagacatgaatgctgttgatagtacaattactctcaaccttccacaaggtt |
728 |
Q |
| |
|
|||||||||||| || ||| | || ||||||||||||||||||| ||||||||| | || |||||||||||| || | ||| || |||||| |||||| |
|
|
| T |
2507567 |
aacaagcaagtgcttctgaaacactatgtgtctggttttcctaaagaatcagacctcaacattgttgatagtactataaatcttaagcttccagaaggtt |
2507468 |
T |
|
| Q |
729 |
ccaatgat |
736 |
Q |
| |
|
|||||||| |
|
|
| T |
2507467 |
ccaatgat |
2507460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 654 - 736
Target Start/End: Complemental strand, 2514632 - 2514550
Alignment:
| Q |
654 |
atgtgtctggttttcctaaggaatcagacatgaatgctgttgatagtacaattactctcaaccttccacaaggttccaatgat |
736 |
Q |
| |
|
||||||||||||||||||| ||||||||| | || |||||||||||| || | ||| || |||||| |||||||||||||| |
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|
| T |
2514632 |
atgtgtctggttttcctaaagaatcagacctcaacattgttgatagtactataaatcttaagcttccagaaggttccaatgat |
2514550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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