View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19586_low_8 (Length: 500)
Name: NF19586_low_8
Description: NF19586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19586_low_8 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 470; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 19 - 500
Target Start/End: Complemental strand, 40627972 - 40627491
Alignment:
| Q |
19 |
tggagacggaggaggtccgtctcaatgcgatgaaaaataccacgacaactcggaaagagtggtggctttgtccactgggtggtacaacggaggttcaaga |
118 |
Q |
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| T |
40627972 |
tggagacggaggaggtccgtctcaatgcgatgaaaaataccacgacaactcggaaagagtggtggctttgtccactgggtggtacaacggaggttcaaga |
40627873 |
T |
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| Q |
119 |
tgtggaaaaatgattagaatcacggcgaggaacgggaggagtgtgacggcgaaagtggtggaccagtgtgattcggtgaatggatgtgataaggaacacg |
218 |
Q |
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| T |
40627872 |
tgtggaaaaatgattagaatcacggcgaggaacgggaggagtgtgacggcgaaagtggtggaccagtgtgattcggtgaatggatgtgataaggaacacg |
40627773 |
T |
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| Q |
219 |
caggtcagccaccttgtcataacaatattgtggatggatctgtatctgtgtggaatgcattagggttgaatacagatgatggtgtagtaccagttacatg |
318 |
Q |
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| T |
40627772 |
caggtcagccaccttgtcataacaatattgtggatggatctgtatctgtgtggaatgcattagggttgaatacagatgatggtgtagtaccagttacatg |
40627673 |
T |
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| Q |
319 |
gtctatggcttaaaaattactcaagtataatgaacatgtaatggctaatcaataagaataagcttaaggtgaaattaagcttgcgtgtgttgtatagaca |
418 |
Q |
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| T |
40627672 |
gtctatggcttaaaaattactcaagtataatgaacatgtaatggctaatcaataagaataagcttaaggtgaaattaagcttgcgtgtgttgtatagaca |
40627573 |
T |
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| Q |
419 |
caccctcaatcacccatttaacattagattctacttgtatttttaagtaaaagtcttgtaaactagtgattttaagccattt |
500 |
Q |
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| T |
40627572 |
caccctcaatcacccatttaacattagattttacttgtatttttaagtaaaagtcttgtaaacgagtgcttttaagccattt |
40627491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 80 - 329
Target Start/End: Complemental strand, 40610705 - 40610456
Alignment:
| Q |
80 |
gtggctttgtccactgggtggtacaacggaggttcaagatgtggaaaaatgattagaatcacggcgaggaacgggaggagtgtgacggcgaaagtggtgg |
179 |
Q |
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| T |
40610705 |
gtggcgttgtctactgggtggtataaaggaggttcaagatgtgggcaaatggttagaatcacagcgaggaatgggaggagtgtgacggcgaaggtggtgg |
40610606 |
T |
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| Q |
180 |
accagtgtgattcggtgaatggatgtgataaggaacacgcaggtcagccaccttgtcataacaatattgtggatggatctgtatctgtgtggaatgcatt |
279 |
Q |
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| T |
40610605 |
atgaatgtgattcagtgaatggttgtgatgaggagcatgcatggcagccaccttgtcgtaacaatattgtggatggatctgtagctgtgtggaatgcatt |
40610506 |
T |
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| Q |
280 |
agggttgaatacagatgatggtgtagtaccagttacatggtctatggctt |
329 |
Q |
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| T |
40610505 |
agggttaaatactgatgatggtgtggtaccagttacatggtctatagctt |
40610456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 20 - 345
Target Start/End: Complemental strand, 40617260 - 40616934
Alignment:
| Q |
20 |
ggagacggaggaggtccgtctcaatgcgatgaaaaataccacgacaactcggaaagagtggtggctttgtccactgggtggtacaacggaggttcaagat |
119 |
Q |
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| T |
40617260 |
ggagacggaggaggtgcttctcagtgcgatgagatattccatagcaactcggaaagaatcgtggcattatcgactggatggtacagtggaggttcaaggt |
40617161 |
T |
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| Q |
120 |
gtggaaaaatgattagaatcacggcgaggaacgggaggagtgtgacggcgaaagtggtggaccagtgtgattcggtgaatggatgtgataaggaacacgc |
219 |
Q |
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| T |
40617160 |
gtggaaaatttattagaattagggcgtcgaacgggaggactgtgaccgcgaaagtggtagaccaatgtgattcagtgaatggatgtgatgatgaacatgc |
40617061 |
T |
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| Q |
220 |
aggtcagccaccttgtcataacaatattgtggatggatctgtatctgtgtggaatgcattagggttgaatacagatgatggtgtagtaccagttacatgg |
319 |
Q |
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| T |
40617060 |
aggtcagccaccttgtcgtaacaatattgtggatggatctgcagctgtgtgggatgaattacggctgaataaaaatgatggtgtagtaccagttacatgg |
40616961 |
T |
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| Q |
320 |
tctatggctt-aaaaattactcaagta |
345 |
Q |
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| T |
40616960 |
actatggcttgaaagaatactcaagta |
40616934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 40641278 - 40641337
Alignment:
| Q |
66 |
actcggaaagagtggtggctttgtccactgggtggtacaacggaggttcaagatgtggaa |
125 |
Q |
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| T |
40641278 |
actcagaaagagtagtggcgctgtccactgggtggtacaacggaggttcaaggtgtggaa |
40641337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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