View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19587_high_10 (Length: 429)
Name: NF19587_high_10
Description: NF19587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19587_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Original strand, 39936704 - 39937099
Alignment:
| Q |
18 |
agataccctagtaagcttgcaccatgccaccatcagccagtggtggaacattacacaagcaattcagttgattagaaatgacatctatatatttgtgacc |
117 |
Q |
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| T |
39936704 |
agataccctagtaagcttgcaccatgccaccatcggccagtggtggaacattacacaagcaattcagttgattagaaatgacatctatatatttgtgacc |
39936803 |
T |
|
| Q |
118 |
ttaacaaaaggtcatgccactatctagtagcaagttggtcatgtagtttcatttctgaaacagagagtacaacttatgcagatgatgtccatgggatgtg |
217 |
Q |
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| T |
39936804 |
ttaacaaaaggtcatgccactatctagtagcaagttggtcatgtagtttcatttctgaaacagagagtacaacttatgcagatgatgtccatgggatgtg |
39936903 |
T |
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| Q |
218 |
gcatggtacctatgatgtttcctggaatccagcagtatatgccaacggttggaatgggaatggggatgggtatggaaatgggaataaacagaccagtaat |
317 |
Q |
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| T |
39936904 |
gcatggtacctatgatgtttcctggaatccagcagtatatgccaacggttggaatgggaatggggatgggtatggaaatgggaataaacagaccagtaat |
39937003 |
T |
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| Q |
318 |
gccatttcccaatatgttatccggttctgctttgcctgcagccgcgaatttgggaccaaggttcgcgatgcctcctttccatatgccgcatgttcc |
413 |
Q |
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| T |
39937004 |
gccatttcccaatatgttatccggttctgctttgcctgcagccgcaaatttgggaccaaggttcgcgatgcctcctttccatatgccgcatgttcc |
39937099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 191 - 335
Target Start/End: Complemental strand, 29730151 - 29729995
Alignment:
| Q |
191 |
ttatgcagatgatgtccatgggatgtggcatggtacctatgatgtttcctggaatccagcagtatatgccaacggttggaatgggaatggggatgggt-- |
288 |
Q |
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| T |
29730151 |
ttatgcagatgatgtccatgggatgtggcatggtacctatgatgtttcctggaattcagcaatttatgccggcgatgggaatggggatgggaatgggttt |
29730052 |
T |
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| Q |
289 |
----------atggaaatgggaataaacagaccagtaatgccatttcccaatatgtt |
335 |
Q |
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| T |
29730051 |
agggatggaaatgggaatgggaatgaacagaccagtgatgccatttcctaatatgtt |
29729995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 370 - 415
Target Start/End: Complemental strand, 29729948 - 29729903
Alignment:
| Q |
370 |
ggaccaaggttcgcgatgcctcctttccatatgccgcatgttcctg |
415 |
Q |
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| T |
29729948 |
ggaccaaggttcgctatgcctcctttccatgtgccccatgttcctg |
29729903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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