View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19587_high_11 (Length: 407)
Name: NF19587_high_11
Description: NF19587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19587_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 5 - 281
Target Start/End: Original strand, 40510778 - 40511060
Alignment:
| Q |
5 |
agcccaatttatcattcaaaaaacaaagtttcgtctcatctcaatcccacttcacaagcaagattaaattaatactcccaccacattaacattaaca--- |
101 |
Q |
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| T |
40510778 |
agcccaatttatcattcaaaaaacaaagtttcgtctcatctcaatcccacttcacaagcaagattaaattaatactcccaccacattaacattaacatta |
40510877 |
T |
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| Q |
102 |
---attacaacaatttattactttagtatatactgttgcacattccccttttgttacnnnnnnncaaagtacatcacattcatgcaagttaattataaca |
198 |
Q |
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| T |
40510878 |
acaattacaacaatttattactttagtatatactgttgcacattccccttttgttacaaaaaaacaaagtacatcacattcatgcaagttaattataaca |
40510977 |
T |
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| Q |
199 |
atgtatataaatcattaaatacgtgtatatcactcttaagccaagtatttttgttctttgtaggccctgaagctgaccctccc |
281 |
Q |
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| T |
40510978 |
atgtatataaatcattaaatacgtgtatatcactcttaagccaagtatttttgttctttgtaggccctgaagctgaccctccc |
40511060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 344 - 407
Target Start/End: Original strand, 40511118 - 40511181
Alignment:
| Q |
344 |
gacattatattacttactataaggtaagaagaggaatagaaaaggaattaagctgagttcattc |
407 |
Q |
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| T |
40511118 |
gacattatattacttactataaggtaagaagaggaatagaaaaggaattaagctgagttcattc |
40511181 |
T |
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