View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19587_high_24 (Length: 254)

Name: NF19587_high_24
Description: NF19587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19587_high_24
NF19587_high_24
[»] chr2 (6 HSPs)
chr2 (19-243)||(25550006-25550230)
chr2 (106-221)||(8761171-8761288)
chr2 (106-174)||(10128515-10128584)
chr2 (106-184)||(37965516-37965596)
chr2 (178-234)||(37965265-37965321)
chr2 (106-143)||(15140822-15140859)
[»] chr4 (9 HSPs)
chr4 (106-234)||(53472528-53472655)
chr4 (106-221)||(53469652-53469768)
chr4 (106-234)||(10395977-10396106)
chr4 (106-224)||(27272585-27272705)
chr4 (107-230)||(50887389-50887513)
chr4 (109-191)||(32015180-32015263)
chr4 (107-243)||(29235094-29235236)
chr4 (153-221)||(9010409-9010477)
chr4 (106-190)||(13816957-13817042)
[»] chr3 (4 HSPs)
chr3 (110-230)||(25889642-25889763)
chr3 (107-230)||(30046435-30046558)
chr3 (106-231)||(31141418-31141543)
chr3 (107-187)||(37133804-37133885)
[»] chr7 (5 HSPs)
chr7 (106-225)||(7961791-7961911)
chr7 (120-230)||(11269985-11270096)
chr7 (125-225)||(36207982-36208078)
chr7 (107-243)||(1716606-1716743)
chr7 (161-209)||(38969375-38969423)
[»] chr6 (14 HSPs)
chr6 (105-230)||(13555994-13556120)
chr6 (106-223)||(2921839-2921957)
chr6 (106-186)||(13558009-13558090)
chr6 (108-234)||(16910083-16910209)
chr6 (121-190)||(2923188-2923258)
chr6 (106-209)||(11677136-11677240)
chr6 (106-221)||(11678854-11678966)
chr6 (106-191)||(16403538-16403623)
chr6 (127-234)||(11681440-11681548)
chr6 (106-221)||(14721723-14721838)
chr6 (121-187)||(22880002-22880069)
chr6 (106-225)||(27340600-27340718)
chr6 (106-225)||(27401340-27401458)
chr6 (121-187)||(22898117-22898184)
[»] chr5 (4 HSPs)
chr5 (106-214)||(19670684-19670793)
chr5 (106-187)||(32795563-32795645)
chr5 (106-190)||(26896594-26896679)
chr5 (106-168)||(32796346-32796409)
[»] chr1 (7 HSPs)
chr1 (107-190)||(22826662-22826746)
chr1 (106-190)||(22827057-22827142)
chr1 (106-190)||(22840983-22841068)
chr1 (107-222)||(24284838-24284954)
chr1 (106-190)||(24272761-24272846)
chr1 (149-221)||(20260944-20261016)
chr1 (128-216)||(12458581-12458670)
[»] scaffold0065 (1 HSPs)
scaffold0065 (124-190)||(34727-34792)
[»] scaffold0007 (1 HSPs)
scaffold0007 (106-172)||(260213-260280)
[»] chr8 (2 HSPs)
chr8 (129-188)||(42001905-42001965)
chr8 (106-188)||(33897224-33897307)


Alignment Details
Target: chr2 (Bit Score: 156; Significance: 6e-83; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 25550006 - 25550230
Alignment:
Q  19 ccaatttggatctatttttagtgtttatgaaagcacannnnnnngtacctttctttctttattaccttcttcacaagttaaagctacgaaatatgcaaag 118  Q
    |||||||||||||||||||||||||||||||||||||       |||||||| ||| |||||||| |||||||||||||||||| | |||||||| ||||    
T  25550006 ccaatttggatctatttttagtgtttatgaaagcacatttttttgtacctttttttatttattacattcttcacaagttaaagccaagaaatatgtaaag 25550105  T
Q  119 atttggtcatataaataaaagtcttgtgtgtagtatttcttgcactaatagttagtggattttgctatagctggagttacctctattattcagtatctgt 218  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| || ||||||||||||||    
T  25550106 atttggccatataaataaaagtcttgtgtgtagtatttcttggactaatagttagtggattttcctatagctggagttacctttactattcagtatctgt 25550205  T
Q  219 aattatcgattatagtataattctt 243  Q
    ||||||||||||||||| |||||||    
T  25550206 aattatcgattatagtagaattctt 25550230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 106 - 221
Target Start/End: Complemental strand, 8761288 - 8761171
Alignment:
Q  106 gaaatatgcaaaga-tttggtcatataaataaaagtcttgtgtgt-agtatttcttgcactaatagttagtggattttgctatagctggagttacctcta 203  Q
    |||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||| ||||||| |  ||| |||||    
T  8761288 gaaatatgcaaatactttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaattgttagtggattttgttatagctagcattatctcta 8761189  T
Q  204 ttattcagtatctgtaat 221  Q
     |||||||||||||||||    
T  8761188 ctattcagtatctgtaat 8761171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 10128515 - 10128584
Alignment:
Q  106 gaaatatgcaaagatttggtcatataaataaaagtcttgtgtg-tagtatttcttgcactaatagttagt 174  Q
    |||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  10128515 gaaatatggaaagacttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaatagttagt 10128584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 37965596 - 37965516
Alignment:
Q  106 gaaatatgcaaagatttggtcatataaataaaagtc-ttgtgtg-tagtatttcttgcactaatagttagtggattttgct 184  Q
    |||||||||||||| ||||  ||||||||||||||| ||||||| ||||||||||||||| |||||||| ||| |||||||    
T  37965596 gaaatatgcaaagacttggatatataaataaaagtctttgtgtgttagtatttcttgcaccaatagttaatgggttttgct 37965516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 37965321 - 37965265
Alignment:
Q  178 ttttgctatagctggagttacctctattattcagtatctgtaattatcgattatagt 234  Q
    ||||||||||| |   |||||||||| ||||||||||||||||||||||||||||||    
T  37965321 ttttgctataggtaacgttacctctactattcagtatctgtaattatcgattatagt 37965265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 15140822 - 15140859
Alignment:
Q  106 gaaatatgcaaagatttggtcatataaataaaagtctt 143  Q
    |||||||| |||||||||||||||||||||||||||||    
T  15140822 gaaatatgtaaagatttggtcatataaataaaagtctt 15140859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 106 - 234
Target Start/End: Complemental strand, 53472655 - 53472528
Alignment:
Q  106 gaaatatgcaaagatttggtcatataaataaaagtcttgtgtgt-agtatttcttgcactaatagttagtggattttgctatagctggagttacctctat 204  Q
    |||||||||||||| |||  ||||||||||||||| |||||||| |||||||| ||||| ||| |||||||| ||||||||||||| | ||||||||||     
T  53472655 gaaatatgcaaagacttgc-catataaataaaagt-ttgtgtgttagtatttcatgcaccaatggttagtgggttttgctatagctagcgttacctctac 53472558  T
Q  205 tattcagtatctgtaattatcgattatagt 234  Q
    ||||||||||||||||||||||||||||||    
T  53472557 tattcagtatctgtaattatcgattatagt 53472528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 106 - 221
Target Start/End: Complemental strand, 53469768 - 53469652
Alignment:
Q  106 gaaatatgcaaagatttggtcatataaataaaagtcttgtgtg-tagtatttcttgcactaatagttagtggattttgctatagctggagttacctctat 204  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |  ||||||||||||||||| |||||||    ||||||| |||    
T  53469768 gaaatatgcaaagacttggtcatataaataaaagtcttgtgtgttagtatttcttgaatcaatagttagtggattttactatagccaatgttacctatat 53469669  T
Q  205 tattcagtatctgtaat 221  Q
    |||||||||||||||||    
T  53469668 tattcagtatctgtaat 53469652  T

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Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 106 - 234
Target Start/End: Original strand, 10395977 - 10396106
Alignment:
Q  106 gaaatatgcaaagatttggtcatataaataaaagtcttgtgtgt-agtatttcttgcactaatagttagtggattttgctatagctggagttacctctat 204  Q
    |||||||||||||| | || |||||||||||||| ||||||||| |||||||||||||  |||||||||||| || |||||||| ||| ||| | ||||     
T  10395977 gaaatatgcaaagactcggccatataaataaaagccttgtgtgttagtatttcttgcatcaatagttagtgggttatgctatagatggtgttccttctac 10396076  T
Q  205 tattcagtatctgtaattatcgattatagt 234  Q
    |||||||||||||| |||||||||||||||    
T  10396077 tattcagtatctgtgattatcgattatagt 10396106  T

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Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 27272585 - 27272705
Alignment:
Q  106 gaaatatgcaaagatttggtcatataaataaaagtcttgtgtg-tagtatttcttgcactaatagttagt-ggattttgctatagctggagttacctcta 203  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| || ||||||||||||| |  |||| ||||    
T  27272585 gaaatatgcaaaggtttggtcatataaataaaagtcttgtgtgttagtatttcttgcaccaatagttagtgggtttttgctatagctagcattacttcta 27272684  T
Q  204 ttattcagtatctgtaattat 224  Q
     ||||||  || |||||||||    
T  27272685 ctattcaaaatttgtaattat 27272705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 107 - 230
Target Start/End: Complemental strand, 50887513 - 50887389
Alignment:
Q  107 aaatatgcaaagatttggtcatataaataaaagtcttgtgtgtagtattt-cttgcactaatagttagtggattttgctatagctggagttacctctatt 205  Q
    ||||||||||||  |||| |||||||||||| |||||||| || |  ||| ||| |||||||||||||||| ||||||||||||| |  ||||||||| |    
T  50887513 aaatatgcaaaggcttggccatataaataaatgtcttgtgcgttggttttgcttacactaatagttagtgggttttgctatagctagtattacctctact 50887414  T
Q  206 attcagtatctgtaattatcgatta 230  Q
    ||| ||||| |||||||||| ||||    
T  50887413 atttagtatatgtaattatcaatta 50887389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 32015180 - 32015263
Alignment:
Q  109 atatgcaaagatttggtcatataaataaaagtcttgtgtgt-agtatttcttgcactaatagttagtggattttgctatagctg 191  Q
    ||||||||||| ||||  | ||||||||| || |||||||| |||||||||||||| |||||||||||| ||||||||||||||    
T  32015180 atatgcaaagacttggcaacataaataaaggttttgtgtgttagtatttcttgcaccaatagttagtgggttttgctatagctg 32015263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 243
Target Start/End: Complemental strand, 29235236 - 29235094
Alignment:
Q  107 aaatatgcaaagatttggtcatataaataaaagtcttgtgtg-tagt-atttcttgcactaatagttagtggattttgctatagctggagttacctctat 204  Q
    ||||||||||||| |||| |||||||||||| | |||||||| |||| ||||||||||| ||||||| |||| ||||||||||| |||  |||| ||||     
T  29235236 aaatatgcaaagacttggccatataaataaaggccttgtgtgttagtaatttcttgcaccaatagttcgtgg-ttttgctatagttggtattacatctac 29235138  T
Q  205 tattcag-----tatctgtaattatcgattatagtataattctt 243  Q
    |||||||      || ||||||||||||| |||||| |||||||    
T  29235137 tattcagcatataatttgtaattatcgatcatagtagaattctt 29235094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 9010477 - 9010409
Alignment:
Q  153 atttcttgcactaatagttagtggattttgctatagctggagttacctctattattcagtatctgtaat 221  Q
    ||||| ||||| |||||||||||||||||| ||||| |||  |||||||||  ||||||||| ||||||    
T  9010477 atttcgtgcaccaatagttagtggattttgatatagttggtattacctctagaattcagtatttgtaat 9010409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 13816957 - 13817042
Alignment:
Q  106 gaaatatgcaaagatttggtcatataaataaaagtcttgtgtg-tagtatttcttgcactaatagttagtggattttgctatagct 190  Q
    ||||||||| |||| |||||||||||||||||   ||| |||| || ||||||||| || |||||||||||  |||||| ||||||    
T  13816957 gaaatatgcgaagacttggtcatataaataaagaccttatgtgttattatttcttgtacaaatagttagtgagttttgcgatagct 13817042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 25889642 - 25889763
Alignment:
Q  110 tatgcaaagatttggtcatataaataaaagtcttgtgtgt-agtatttcttgcactaatagttagtggattttgctatagctggagttacctctattatt 208  Q
    ||||||||| |||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||| ||||||||||||| |   |||||||||||||    
T  25889642 tatgcaaaggtttggtcatataaataaaagtcttgtatgttagtatttcttgcaccaatagttagtgggttttgctatagctagcagtacctctattatt 25889741  T
Q  209 cagtatctgtaattatcgatta 230  Q
     ||| | |||||||||| ||||    
T  25889742 tagtctttgtaattatcaatta 25889763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 230
Target Start/End: Original strand, 30046435 - 30046558
Alignment:
Q  107 aaatatgcaaagatttggtcatataaataaaagtcttgtgtgt-agtatttcttgcactaatagttagtggattttgctatagctggagttacctctatt 205  Q
    ||||||||||||| |||  ||||||||||||||  |||||||| ||||||||||| || |||||||||| | ||||||||||||| | |||||||||| |    
T  30046435 aaatatgcaaagacttgaccatataaataaaagctttgtgtgttagtatttcttgtac-aatagttagtcggttttgctatagctagcgttacctctact 30046533  T
Q  206 attcagtatctgtaattatcgatta 230  Q
    ||||| ||| || ||||||||||||    
T  30046534 attcaatatatgcaattatcgatta 30046558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 231
Target Start/End: Original strand, 31141418 - 31141543
Alignment:
Q  106 gaaatatgcaaagatttggtcatataaataaaagtcttgtgtg-tagtatttcttgcactaatagttagtggattttgctatagctggagttacctctat 204  Q
    ||||||||||||||||| | ||||||||||||||||||| ||| ||||||||||| ||| |||||| |||  | |||||||||  |||  |||||||||     
T  31141418 gaaatatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttacaccaatagtaagt-aagtttgctataattggtattacctctac 31141516  T
Q  205 tattcagtatctgtaattatcgattat 231  Q
    |||||| ||| |||||| || ||||||    
T  31141517 tattcaatatttgtaataattgattat 31141543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 187
Target Start/End: Complemental strand, 37133885 - 37133804
Alignment:
Q  107 aaatatgcaaagatttggtcatataaataaaagtcttgtgtgt-agtatttcttgcactaatagttagtggattttgctata 187  Q
    |||||| | ||||||| | | ||| |||||||||||||||| | |||||||||| ||  ||||||||||| |||||||||||    
T  37133885 aaatatacgaagatttagccgtatgaataaaagtcttgtgtattagtatttcttacatcaatagttagtgaattttgctata 37133804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 106 - 225
Target Start/End: Original strand, 7961791 - 7961911
Alignment:
Q  106 gaaatatgcaaagatttggtcatataaataaaagtcttgtgtgt-agtatttcttgcactaatagttagtggattttgctatagctggagttacctctat 204  Q
    ||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||| ||||||||||||| |  |||| ||||     
T  7961791 gaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttagtatttcttgcaccaatagttagtgggttttgctatagctagcattacttctac 7961890  T
Q  205 tattcagtatctgtaattatc 225  Q
    ||||||  || ||||||||||    
T  7961891 tattcaaaatttgtaattatc 7961911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 120 - 230
Target Start/End: Original strand, 11269985 - 11270096
Alignment:
Q  120 tttggtcatataaataaaagtcttgtgtgt-agtatttcttgcactaatagttagtggattttgctatagctggagttacctctattattcagtatctgt 218  Q
    |||||||||||||||||||| ||||||||| ||||||  |||||| |||||||||||| |||||||||| || | |||||||||| |||||||||| |||    
T  11269985 tttggtcatataaataaaagccttgtgtgttagtattagttgcaccaatagttagtgggttttgctataactagtgttacctctactattcagtatttgt 11270084  T
Q  219 aattatcgatta 230  Q
    ||||||| ||||    
T  11270085 aattatcaatta 11270096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 36207982 - 36208078
Alignment:
Q  125 tcatataaataaaagtcttgtgtgtagtatttcttgcactaatagttagtggattttgctatagctggagttacctctattattcagtatctgtaattat 224  Q
    ||||||||||||||||   |||| ||||||||||||||| |||||||||||| ||||||||||||| | |||| ||||| |||| ||||||| |||||||    
T  36207982 tcatataaataaaagt---gtgt-tagtatttcttgcaccaatagttagtgggttttgctatagctagcgttagctctactatttagtatctctaattat 36208077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 243
Target Start/End: Complemental strand, 1716743 - 1716606
Alignment:
Q  107 aaatatgcaaagatttggtcatataaataaaagtcttgtgtgt-agtatttcttgcactaatagttagtggattttgctatagctggagttacctctatt 205  Q
    ||||||| ||||| |||  |||||||||||| ||||||||||| | |||||||||||  |||||||||||  ||||  |||||||||  ||||||||| |    
T  1716743 aaatatgtaaagacttgaccatataaataaaggtcttgtgtgttaatatttcttgcatcaatagttagtgagtttttttatagctggtattacctctact 1716644  T
Q  206 attcagtatctgtaattatcgattatagtataattctt 243  Q
    ||||||||| | | || ||||||||||||  |||||||    
T  1716643 attcagtatatatgataatcgattatagtggaattctt 1716606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 38969423 - 38969375
Alignment:
Q  161 cactaatagttagtggattttgctatagctggagttacctctattattc 209  Q
    |||||||||||||||| |||||||||| ||||  ||||||||| |||||    
T  38969423 cactaatagttagtggtttttgctataactggtattacctctactattc 38969375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 105 - 230
Target Start/End: Complemental strand, 13556120 - 13555994
Alignment:
Q  105 cgaaatatgcaaagatttggtcatataaataaaagtcttgtgtgt-agtatttcttgcactaatagttagtggattttgctatagctggagttacctcta 203  Q
    ||||||||||||||  ||||||||||||||||||| ||||||||| |||||||||||||| |||||||| ||| ||||||||||||| |  |||| ||||    
T  13556120 cgaaatatgcaaaggcttggtcatataaataaaagccttgtgtgttagtatttcttgcaccaatagttactgggttttgctatagctagcattacttcta 13556021  T
Q  204 ttattcagtatctgtaattatcgatta 230  Q
     ||||||  || |||||||||| ||||    
T  13556020 ctattcaaaatttgtaattatcaatta 13555994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 223
Target Start/End: Complemental strand, 2921957 - 2921839
Alignment:
Q  106 gaaatatgcaaagatttggtcatataaataaaagtcttgtgtgt-agtatttcttgcactaatagttagtggattttgctatagctggagttacctctat 204  Q
    ||||||||||| || ||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||| ||||||||||||| |  |||| ||||     
T  2921957 gaaatatgcaatgacttggtaatataaataaaagtcttatgtgttagtatttcttgcaccaatagttagtgggttttgctatagctagcattacgtctaa 2921858  T
Q  205 tattcagtatctgtaatta 223  Q
    ||||||  || ||||||||    
T  2921857 tattcaaaatttgtaatta 2921839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 13558090 - 13558009
Alignment:
Q  106 gaaatatgcaaagatttggtcatataaataaaagtcttgtgtgt-agtatttcttgcactaatagttagtggattttgctat 186  Q
    |||||||||||||  |||||||||||||||||||  |||||||| |||||||| ||||| ||||||||||||||||||||||    
T  13558090 gaaatatgcaaaggcttggtcatataaataaaagcattgtgtgttagtatttcatgcaccaatagttagtggattttgctat 13558009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 234
Target Start/End: Complemental strand, 16910209 - 16910083
Alignment:
Q  108 aatatgcaaagatttggtcatataaataaaagtcttgtgtgt-agtatttcttgcactaatagttagtggattttgctatagctggagttacctctatta 206  Q
    |||||||||||| ||||   ||||||||||||| |||||||| ||||||| |||| | ||||||| |||  ||||||||||||| | || || | || ||    
T  16910209 aatatgcaaagacttggcattataaataaaagtattgtgtgttagtatttgttgcgccaatagtttgtgtgttttgctatagctagcgt-acatttacta 16910111  T
Q  207 ttcagtatctgtaattatcgattatagt 234  Q
    ||||||||||||||||||||||||||||    
T  16910110 ttcagtatctgtaattatcgattatagt 16910083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 2923258 - 2923188
Alignment:
Q  121 ttggtcatataaataaaagtcttgtgtg-tagtatttcttgcactaatagttagtggattttgctatagct 190  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| | ||| |||||||    
T  2923258 ttggtcatataaataaaagtcttgtgtgttagtacttcttgcactaatagttagtgggtcttgttatagct 2923188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 209
Target Start/End: Original strand, 11677136 - 11677240
Alignment:
Q  106 gaaatatgcaaagatttggtcatataaataaaagtcttgtgtg-tagtatttcttgcactaatagttagtggattttgctatagctggagttacctctat 204  Q
    |||||||||||||  ||| |||||||||||||| ||||||||| ||||||||||  ||| ||||||||| || |||| |||||||| |  |||||||||     
T  11677136 gaaatatgcaaaggattgatcatataaataaaactcttgtgtgttagtatttctaacaccaatagttagcgggttttcctatagctagcattacctctac 11677235  T
Q  205 tattc 209  Q
    |||||    
T  11677236 tattc 11677240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 221
Target Start/End: Original strand, 11678854 - 11678966
Alignment:
Q  106 gaaatatgcaaagatttggtcatataaataaaagtcttgtgtg-tagtatttcttgcactaatagttagtggattttgctatagctggagttacctctat 204  Q
    |||||||||||||  |||||||| ||||||||| ||||||||| ||||||||||  ||| ||    |||||||||||||||||| | |  |||||||||     
T  11678854 gaaatatgcaaaggcttggtcatgtaaataaaactcttgtgtgttagtatttctaacaccaa----tagtggattttgctatagttagcattacctctac 11678949  T
Q  205 tattcagtatctgtaat 221  Q
    |||||||||| ||||||    
T  11678950 tattcagtatttgtaat 11678966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 191
Target Start/End: Original strand, 16403538 - 16403623
Alignment:
Q  106 gaaatatgcaaagatttggtcatataaataaaagtcttgtgtg-tagtatttcttgcactaatagttagtggattttgctatagctg 191  Q
    ||||||||||| || || ||||||||||||||||||||||||| |  ||||  |||||| |||| ||||||||||||||||||||||    
T  16403538 gaaatatgcaa-gacttagtcatataaataaaagtcttgtgtgtttatattatttgcaccaataattagtggattttgctatagctg 16403623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 234
Target Start/End: Complemental strand, 11681548 - 11681440
Alignment:
Q  127 atataaataaaagtcttgtgtg-tagt-atttcttgcactaatagttagtggattttgctatagctggagttacctctattattcagtatctgtaattat 224  Q
    |||||||||||||| ||||||| |||| ||||||||||  |||||||||||| |||| ||||||| ||  |||||| || |||||||||| |||||| ||    
T  11681548 atataaataaaagttttgtgtgttagtaatttcttgcaacaatagttagtgg-ttttactatagcaggtattacctatactattcagtatatgtaatcat 11681450  T
Q  225 cgattatagt 234  Q
     |||||||||    
T  11681449 tgattatagt 11681440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 221
Target Start/End: Original strand, 14721723 - 14721838
Alignment:
Q  106 gaaatatgcaaagatttggtcatataaataaaagtcttgtgtgta-gtatttcttgcactaatagttagtggattttgctatagctggagttacctctat 204  Q
    ||||||||||||||||||| | |||||||||||| ||||| | || ||||||||||||  |||||||| ||| ||||| |||| |||   |||||| ||     
T  14721723 gaaatatgcaaagatttggcc-tataaataaaagccttgtttataagtatttcttgcagcaatagttaatgggttttgttatatctgatattacctatac 14721821  T
Q  205 tattcagtatctgtaat 221  Q
    ||||| |||||||||||    
T  14721822 tattcggtatctgtaat 14721838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 187
Target Start/End: Complemental strand, 22880069 - 22880002
Alignment:
Q  121 ttggtcatataaataaaagtcttgtgtgt-agtatttcttgcactaatagttagtggattttgctata 187  Q
    ||||||||||||||||| || |||||||| | |||||||||||| |||| ||||||| ||||||||||    
T  22880069 ttggtcatataaataaaggttttgtgtgttaatatttcttgcaccaataattagtgggttttgctata 22880002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 225
Target Start/End: Complemental strand, 27340718 - 27340600
Alignment:
Q  106 gaaatatgcaaagatttggtcatataaataaaagtcttgtgtgtagtatttcttgcactaatagttagtggattttgctatagctggagttacctctatt 205  Q
    |||||||||||||  ||||||||||||||||||    ||||| |||||| ||||| || |||||||||||| |||||||||| || |  |||| |||| |    
T  27340718 gaaatatgcaaaggcttggtcatataaataaaaactgtgtgt-tagtatatcttgtaccaatagttagtgggttttgctataactagcattacttctact 27340620  T
Q  206 attcagtatctgtaattatc 225  Q
    |||||  || ||||||||||    
T  27340619 attcaaaatttgtaattatc 27340600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 225
Target Start/End: Complemental strand, 27401458 - 27401340
Alignment:
Q  106 gaaatatgcaaagatttggtcatataaataaaagtcttgtgtgtagtatttcttgcactaatagttagtggattttgctatagctggagttacctctatt 205  Q
    |||||||||||||  ||||||||||||||||||    ||||| |||||| ||||| || |||||||||||| |||||||||| || |  |||| |||| |    
T  27401458 gaaatatgcaaaggcttggtcatataaataaaaactgtgtgt-tagtatatcttgtaccaatagttagtgggttttgctataactagcattacttctact 27401360  T
Q  206 attcagtatctgtaattatc 225  Q
    |||||  || ||||||||||    
T  27401359 attcaaaatttgtaattatc 27401340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 187
Target Start/End: Complemental strand, 22898184 - 22898117
Alignment:
Q  121 ttggtcatataaataaaagtcttgtgtgt-agtatttcttgcactaatagttagtggattttgctata 187  Q
    ||||||||||||||||| || || ||||| | |||||||||||| |||| ||||||| ||||||||||    
T  22898184 ttggtcatataaataaaggttttttgtgttaatatttcttgcaccaataattagtgggttttgctata 22898117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 214
Target Start/End: Original strand, 19670684 - 19670793
Alignment:
Q  106 gaaatatgcaaagatttggtcatataaataaaagtcttgtgtgt-agtatttcttgcactaatagttagtggattttgctatagctggagttacctctat 204  Q
    |||||||||||||  || |||||||||||||||| ||||||||| |||||| |||| || |||||||||||| ||||||||||||| | ||||||||||     
T  19670684 gaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattacttgtaccaatagttagtgggttttgctatagctagcgttacctctac 19670783  T
Q  205 tattcagtat 214  Q
    ||||||||||    
T  19670784 tattcagtat 19670793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 187
Target Start/End: Complemental strand, 32795645 - 32795563
Alignment:
Q  106 gaaatatgcaaagatttggtcatataaataaaagtcttgtgtgt-agtatttcttgcactaatagttagtggattttgctata 187  Q
    |||||||||||||| || ||||||| ||||||||||||| |||| |||||| |||| || |||||||||||| ||||||||||    
T  32795645 gaaatatgcaaagacttagtcatattaataaaagtcttgcgtgtcagtattacttgtaccaatagttagtgggttttgctata 32795563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 26896594 - 26896679
Alignment:
Q  106 gaaatatgcaaagatttggtcatataaataaaagtcttgtgtgt-agtatttcttgcactaatagttagtggattttgctatagct 190  Q
    |||||||||||||| |||| ||||||||||||    |||||||| ||||||||||||| ||||||||| ||  |||||||||||||    
T  26896594 gaaatatgcaaagacttggccatataaataaagacattgtgtgttagtatttcttgcattaatagttaatgtgttttgctatagct 26896679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 32796409 - 32796346
Alignment:
Q  106 gaaatatgcaaagatttggtcatataaataaaagtcttgtgtg-tagtatttcttgcactaata 168  Q
    |||||||||||||  || |||||||||||||||| |||||||| ||||||| ||||||| ||||    
T  32796409 gaaatatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattccttgcacaaata 32796346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 190
Target Start/End: Complemental strand, 22826746 - 22826662
Alignment:
Q  107 aaatatgcaaagatttggtcatataaataaaagtcttgtgtgt-agtatttcttgcactaatagttagtggattttgctatagct 190  Q
    |||| |||||||  ||||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  22826746 aaatctgcaaaggcttggtcatataaataaaagccttatgtgttagtatttcttgcaccaatagttagtggattttgctatagct 22826662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 190
Target Start/End: Complemental strand, 22827142 - 22827057
Alignment:
Q  106 gaaatatgcaaagatttggtcatataaataaaagtcttgtgtg-tagtatttcttgcactaatagttagtggattttgctatagct 190  Q
    ||||||||||||| |||||||||||||||||||| |||||||| |  |||||||||||| |||||||||||| ||||| |||||||    
T  22827142 gaaatatgcaaaggtttggtcatataaataaaagccttgtgtgttcatatttcttgcaccaatagttagtgggttttgttatagct 22827057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 22840983 - 22841068
Alignment:
Q  106 gaaatatgcaaagatttggtcatataaataaaagtcttgtgtgt-agtatttcttgcactaatagttagtggattttgctatagct 190  Q
    |||||||||||||  ||||||||| ||||||||| ||||||||| |||||||||||||| |||||||||||| |||| ||||||||    
T  22840983 gaaatatgcaaaggcttggtcataaaaataaaagccttgtgtgttagtatttcttgcaccaatagttagtgggttttactatagct 22841068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 222
Target Start/End: Original strand, 24284838 - 24284954
Alignment:
Q  107 aaatatgcaaagatttggtcatataaataaaagtcttgtgtgt-agtatttcttgcactaatagttagtggattttgctatagctggagttacctctatt 205  Q
    ||||||||||| ||||||  ||||||||||| |  |||||||| | |||||||||||| |||||| ||||||| || ||||||||||  ||| ||||| |    
T  24284838 aaatatgcaaatatttggctatataaataaaggcattgtgtgttaatatttcttgcaccaatagtcagtggatgttactatagctggtattagctctact 24284937  T
Q  206 attcagtatctgtaatt 222  Q
    ||| |||||||||||||    
T  24284938 atttagtatctgtaatt 24284954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 24272761 - 24272846
Alignment:
Q  106 gaaatatgcaaagatttggtcatataaataaaagtcttgtgtgt-agtatttcttgcactaatagttagtggattttgctatagct 190  Q
    |||||||||||||| |||   ||||| ||||| | ||||||||| |||||||||||||| |||||||||||  |||| ||||||||    
T  24272761 gaaatatgcaaagacttgacaatatatataaaggccttgtgtgttagtatttcttgcaccaatagttagtgagttttactatagct 24272846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 20261016 - 20260944
Alignment:
Q  149 tagtatttcttgcactaatagttagtggattttgctatagctggagttacctctattattcagtatctgtaat 221  Q
    ||||||||||||||  ||||| || || ||||||||||| || | |||||||||| |||||||||| ||||||    
T  20261016 tagtatttcttgcatcaatagctaatgaattttgctataactagcgttacctctactattcagtatatgtaat 20260944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 12458581 - 12458670
Alignment:
Q  128 tataaataaaagtcttgtgtgt-agtatttcttgcactaatagttagtggattttgctatagctggagttacctctattattcagtatct 216  Q
    ||||||||||   ||||||||| ||||||||||| || |||||||||| |  ||||||| ||||||  ||||||||| |||||| |||||    
T  12458581 tataaataaagaccttgtgtgttagtatttcttgtaccaatagttagtaggatttgctagagctggtattacctctactattcaatatct 12458670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 34727 - 34792
Alignment:
Q  124 gtcatataaataaaagtcttgtgtgtagtatttcttgcactaatagttagtggattttgctatagct 190  Q
    |||||||||||||||||||||||| |||||||  | |||| |||||||||||| |||||||||||||    
T  34727 gtcatataaataaaagtcttgtgt-tagtattattagcaccaatagttagtgggttttgctatagct 34792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 260280 - 260213
Alignment:
Q  106 gaaatatgcaaagatttggtcatataaataaaagtcttgtgtg-tagtatttcttgcactaatagtta 172  Q
    |||||||||||||| || |||| ||||||||||  |||||||| ||||||||||||||| ||||||||    
T  260280 gaaatatgcaaagacttagtcaaataaataaaatccttgtgtgttagtatttcttgcaccaatagtta 260213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 42001905 - 42001965
Alignment:
Q  129 ataaataaaagtcttgtgtg-tagtatttcttgcactaatagttagtggattttgctatag 188  Q
    |||||||||||||||||||| ||||| | ||||||| |||||||||| | |||||||||||    
T  42001905 ataaataaaagtcttgtgtgttagtaatacttgcaccaatagttagtaggttttgctatag 42001965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 188
Target Start/End: Original strand, 33897224 - 33897307
Alignment:
Q  106 gaaatatgcaaagatttggtcatataaataaaagtcttgtgtg-tagtatttcttgcactaatagttagtggattttgctatag 188  Q
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T  33897224 gaaatatgtaaagatttgacaatataaataaaagtcttgtgtgttagtattttttacaccaataattagtaggttttgttatag 33897307  T

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