View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19587_high_30 (Length: 218)
Name: NF19587_high_30
Description: NF19587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19587_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 41 - 199
Target Start/End: Original strand, 37655815 - 37655976
Alignment:
| Q |
41 |
atgactaaattttaaataaattaaaacgcaaagacaagagcacatacaaacatgtgaaacacacgtg-aaaattagatt-caagattagaagttccctta |
138 |
Q |
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| T |
37655815 |
atgactaaattttaaataaattaaaacccaaagacaagagcacatacaaacatgtgaaacacacgtgaaaaattagattaaaagattagaagttccctta |
37655914 |
T |
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| Q |
139 |
ttatatagcttgctactgccac-cacaactgtatgttttgggttcactgctagtgttcgacc |
199 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37655915 |
ttatatagcttgctactgccacaaacaactgtatgttttgggttcactgctagtgttcgacc |
37655976 |
T |
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