View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19587_high_4 (Length: 492)
Name: NF19587_high_4
Description: NF19587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19587_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 10 - 244
Target Start/End: Original strand, 38384954 - 38385188
Alignment:
| Q |
10 |
agtgagatgaagatttccatgtagatgaatgttgcaactaagaatcttccctttgatccaaatgcttgaatcccaatatccacataacttgttaactttg |
109 |
Q |
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| T |
38384954 |
agtgacatgaagatttccatgtagatgaatgttgcaactaagaatcttccctttgatccaaatgcttgattcccaatatccacataacttgttaactttg |
38385053 |
T |
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| Q |
110 |
gattcttttcaagacattttccaagtatatgtgaggtataagcacagattaccccaagtcctactagcaataaggtagatgcccaccctcctttttcaac |
209 |
Q |
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| T |
38385054 |
gattcttttcaagacattttccaagtatatgagaggtataagcacagattaccccaagtcctactagcaataaggtagatgcccaccctcctttttcaac |
38385153 |
T |
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| Q |
210 |
agcatatggagttgatagttgccccaaacctgaaa |
244 |
Q |
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| T |
38385154 |
agcatatggagttgatagttgccccaaacctgaaa |
38385188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 308 - 474
Target Start/End: Original strand, 38385252 - 38385418
Alignment:
| Q |
308 |
taattattacttgaacaagccactttagattatgattacttaatcctaattaaaacaagggataaagtttatcggtattctttaataaatttatccgaaa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38385252 |
taattattacttgaacaagccactttagattatgattacttaatcctaattaaaacaagggataaagtttatcggtattctttaataaatttatccgaaa |
38385351 |
T |
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| Q |
408 |
aataatatctcccaacagaaaacacctagaacatatcatttcatatgaaagttttatgcagtgaaat |
474 |
Q |
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| T |
38385352 |
aataatatctcccaacagaaaacacctagaacatatcatttcatatgaaagttttatgcagtgaaat |
38385418 |
T |
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