View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19587_high_5 (Length: 477)
Name: NF19587_high_5
Description: NF19587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19587_high_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 477
Target Start/End: Complemental strand, 40511606 - 40511147
Alignment:
| Q |
18 |
ctcagatggcgagatcattcccgattcgttagcaggaaaaagctgaattgtccgtacacctgcttctccggcgccggaatgttgaagttcaccggagata |
117 |
Q |
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| T |
40511606 |
ctcagatggcgagatcattcccgattcgttagcaggaaaaagctgaattgtccgtacacctgcttctccggcgccggaatgttgaagttcaccggagata |
40511507 |
T |
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| Q |
118 |
gtactgttgtcgacggaagcgttgttgttgagtatggcgaagttgtaaccgtatgcatcgccgtaagagcatgaatcttcagtgtcggcagcgttgacga |
217 |
Q |
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| T |
40511506 |
gtactgttgtcgacggaagcgttgttgttgagtatggcgaagttgtaaccgtatgcatcgccgtaagagcatgaatcttcagtgtcggcagcgttgacga |
40511407 |
T |
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| Q |
218 |
cggaggaatcaaagctaccggatgaatcttccatctgaacgacggaggagagtggaagagaggaatcagcgttgagattgagatccaacattgtgaggtt |
317 |
Q |
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| T |
40511406 |
cggaggaatcaaagctaccggatgaatcttccatctgaacgacggaggagagtggaagagaggaatcagcgttgagattgagatccaacattgtgaggtt |
40511307 |
T |
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| Q |
318 |
tgagtttgttacgattcagttatgaagatttggagggaaaaatatatataaagcgagttttagttagttagaatgaaagagagagaaggatccaaaatga |
417 |
Q |
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| T |
40511306 |
tgagtttgttacgattcagttatgaagatttggagggaaaaatatatataaagcgagttttagttagttagaatgaaagagagagaaggatccaaaatga |
40511207 |
T |
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| Q |
418 |
aaatgcttcacttcattgttctcgtgaatgaactcagcttaattcctttgctactcctct |
477 |
Q |
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| T |
40511206 |
aaatgcttcacttcattgttctcgtgaatgaactcagcttaattccttttctattcctct |
40511147 |
T |
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