View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19587_high_7 (Length: 461)
Name: NF19587_high_7
Description: NF19587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19587_high_7 |
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| [»] scaffold0391 (2 HSPs) |
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Alignment Details
Target: scaffold0391 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 12 - 298
Target Start/End: Complemental strand, 7283 - 6997
Alignment:
| Q |
12 |
atgaaacacactatcttcttgctaaagtaannnnnnnaaatctctaaattattctaaaaatattcaccttacaattactgttgtaggaggattattaata |
111 |
Q |
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| T |
7283 |
atgaaacacactatcttcttgctaaagtaatttttttaaatctctaaattattctaaaaatattcaccttacaattactgttgtaggaggattattaata |
7184 |
T |
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| Q |
112 |
gaattgaaagaatggaagcgcgaaacgtaggttatatattatccacacaaagaaataacgtagcaattttgttatcaactctttgcgcaggtttccataa |
211 |
Q |
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| T |
7183 |
gaattgaaagaatggaagcgcgaaacgtaggttatatattatccacacaaagaaataacgtagcaattttgttatcaactctttgcgcaggttttcataa |
7084 |
T |
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| Q |
212 |
tggaaaatgatggttcttacgaaagaaaattcgttgcactgcatgaccatgtgtattgactagtatacaataaacgtattaaactta |
298 |
Q |
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| T |
7083 |
tggaaaatgatggttcttacgaaagaaaattcgttgcactgcatgaccatgtgtattgactagtatacaataaacgtattaaactta |
6997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 330 - 443
Target Start/End: Complemental strand, 6986 - 6873
Alignment:
| Q |
330 |
aaaaacgtattaaactataaacgtgacccacatcgtcaatttctgtgttgacttaggtcattgcatgtgactcacatcctcaattgctgtgttgttagga |
429 |
Q |
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| T |
6986 |
aaaaacgtattaaactataaacgtgacccacatcgtcaatttctgtgttgacttaggtcattgcatgtgactcacatcctcaattgctgtgttgttagga |
6887 |
T |
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| Q |
430 |
ccggtgtacactac |
443 |
Q |
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| T |
6886 |
ccggtgtacactac |
6873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 12 - 181
Target Start/End: Complemental strand, 34116764 - 34116596
Alignment:
| Q |
12 |
atgaaacacactatcttcttgctaaagtaannnnnnnaaatctctaaattattctaaaaatattcaccttacaattactgttgtaggaggattattaata |
111 |
Q |
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||||||||||| |||||||||||||||||| ||||| ||||| |||||| ||||||||||||||||||||| |||||||||| |||||| || |
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| T |
34116764 |
atgaaacacacaatcttcttgctaaagtaatttttttaaatcactaaaatattctcaaaatattcaccttacaattattgttgtaggaagattat---ta |
34116668 |
T |
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| Q |
112 |
gaattgaaagaatggaagcgcgaaacgtaggt-tatata-ttatccacacaaagaaataacgtagcaatttt |
181 |
Q |
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|||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
34116667 |
gaattgaaagaatggaagcgcgaaacataggtatatatatttatccacacaaagaaataacgtagcaatttt |
34116596 |
T |
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