View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19587_low_1 (Length: 676)
Name: NF19587_low_1
Description: NF19587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19587_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 504; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 76 - 671
Target Start/End: Original strand, 45143652 - 45144254
Alignment:
| Q |
76 |
ttgcaaggaaatgtgagaattctacattcaaattaaagaaagaactggtgaattgagagaattcacgatgattagagatacagaaca------------- |
162 |
Q |
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| T |
45143652 |
ttgcaaggaaatgtgacaattctacattcaaattaaagaaagaactggtgaattgagagaattcacgatgattagagatacagaacagaacagttactac |
45143751 |
T |
|
| Q |
163 |
-agtgcaagtgagtgacataataataataaaataaaagctaactaattaactacaaagtgggcattgaactaacccattttcattacaatcaacacactt |
261 |
Q |
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| T |
45143752 |
aagtgcaagtgagtaacataataataa---aataaaagataactaa----ctacaaattgggcactgaactaacccattttcattacaatcaccacactt |
45143844 |
T |
|
| Q |
262 |
aacaacaacagtgttcccctgtttctgtttattcaccatcttacagcttccgttacatcgaaaacaaggcaagaatctcatatcaccacaaccctcacat |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45143845 |
aacaacaacagtgttcccctgtttctgtttattcaccatcttacagcttccgttacatcgaaaacaaggcaagaatctcatatcaccacaaccctcacat |
45143944 |
T |
|
| Q |
362 |
acacctcctccaccaacagcttttcttggcaaaccctgaataacctctcccaacaaaccctcttccacaaccttcaacatctcttcagcaccaccgatat |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45143945 |
acacctcctccaccaacagcttttcttggcaaaccctgaataacctctcccaacaaaccctcttccacaaccttcaacatctcttcagcaccaccgatat |
45144044 |
T |
|
| Q |
462 |
aatatcccttcacaaacactctcggcggaatcaccatcttctctttcagaagctccctcagttcctctttaaacccactatccatcgaaacgtcacgctc |
561 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45144045 |
aatatcccttcacaaacactctcggcggaaccaccatcttctctttcagaagctccctcagttcctctttaaacccactatccatcgaaacgtcacgctc |
45144144 |
T |
|
| Q |
562 |
gcatatttgtacaccaaatgcatcaaaagctgctctcaccgcattgcaagcctcaaatgtcctccgaacacctctcaacgttgttgtatagatcaccact |
661 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45144145 |
gcatatttgtacaccaaatgcatcaaaagctgctctcaccgcattgcaagcctcaaatgtcctccgaacacctctcaacgttgttgtatagatcaccact |
45144244 |
T |
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| Q |
662 |
ttcttctctc |
671 |
Q |
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|||||||||| |
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| T |
45144245 |
ttcttctctc |
45144254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 45143517 - 45143571
Alignment:
| Q |
20 |
ggaggtttatgtgggaaacc-aagagagagtctattattgacatagcaaactata |
73 |
Q |
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| T |
45143517 |
ggaggtttatgtgggaaacccaagagagagtctattattgacatagcaaactata |
45143571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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