View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19587_low_13 (Length: 382)
Name: NF19587_low_13
Description: NF19587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19587_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 16 - 368
Target Start/End: Original strand, 48250605 - 48250957
Alignment:
| Q |
16 |
gtttcatagttcaatggtgaattcaaagggtactgaaattgatactaacctgcaaaaacagaagcttgtctcttattatgatggggtgttcttgttccgg |
115 |
Q |
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| T |
48250605 |
gtttcatagttcaatggtgaattcaaagggtactgaaattgatactaacctgcaaaaacagaagcttgtctcttattatgatggggtgttcttgttccgg |
48250704 |
T |
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| Q |
116 |
aggagacgcgataagggtctcaagcaagtgagttttgaaagctttaacttcagtttcagctacaattccttctttgtgaagacccatcaagtttaaaact |
215 |
Q |
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| T |
48250705 |
aggagacgcgataagggtctcaagcaagtgagttttgaaagctttaacttcagtttcagctacaattccttctttgtgaagacccatcaagtttaaaact |
48250804 |
T |
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| Q |
216 |
tggtggaaagaatcttgttgccatttaaggttgtcggattgtagcttagacaatctatgttctgcagaaggtaaagaacgttttttgaagttgaaaggaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48250805 |
tggtggaaagaatcttgttgccatttaaggttgtcggattgtagcttagacaatctatgttctgcagaaggtaaagaacgttttttgaagttgaaaggaa |
48250904 |
T |
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| Q |
316 |
gaatggttttgcagaaagaggtgattgaatcatgaagagtagagtagtaagtg |
368 |
Q |
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| T |
48250905 |
gaatggttttgcagaaagaggtgattgaatcatgaagagtagagtagtaagtg |
48250957 |
T |
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