View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19587_low_15 (Length: 373)
Name: NF19587_low_15
Description: NF19587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19587_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 2 - 361
Target Start/End: Complemental strand, 21243191 - 21242828
Alignment:
| Q |
2 |
gaggagcagcac-agacccaatactcttcagagaagaaacatcatatttcccaaccacactttgtttcgctaaagcaagaatcatcggtggcacaaccca |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21243191 |
gaggagcagcaccagacccaatactcttcaaagaagaaacatcatatttcccaaccacactctgtttcgctaaagcaagaatcatcggtggcacaaccca |
21243092 |
T |
|
| Q |
101 |
caagttcgtcactttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21243091 |
caagttcgtcactttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtat |
21242992 |
T |
|
| Q |
201 |
gttataaccgccaatccaaacacatgaaacatcggtaaaacgcagaggaacac---gtttaattcccctgctaaatcatcatccatgtttattatcaatg |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||| ||||| | |
|
|
| T |
21242991 |
gttataaccgccaatccaaacacatgaaacatcggtaaaacgcagatgaacacattgtttaattccccagctaaatcatcatccatgtttatcatcaacg |
21242892 |
T |
|
| Q |
298 |
aagtcgcgatgaagttcttgtgggtgagtatcacacctttgctcactcctgtagttcctgatga |
361 |
Q |
| |
|
| | ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21242891 |
acgctgcgatgaagttcttgtgtgtgagaatcacacctttgctcactcctgtagttcctgatga |
21242828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 21258939 - 21258597
Alignment:
| Q |
18 |
ccaatactcttcagagaagaaacatcatatttcccaaccacactttgtttcgctaaagcaagaatcatcggtggcacaacccacaagttcgtcactttat |
117 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| |||||| ||||||||||||||| | |||||| ||| |
|
|
| T |
21258939 |
ccaatactcttcaacgaagaaacatcatatttcccaaccacactctgtttcgccaaagcaagattcatcgatggcacaacccacaaagttgtcactctat |
21258840 |
T |
|
| Q |
118 |
acttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtatgttataaccgccaatcc |
217 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||| |||||| | |||||||| | |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21258839 |
acttttcaatcaccttcaaaaa-ccctctaactcaaatctccccgttgaaaccaccgcacttcctctccttagctgcgcgtatgttataaccgccaatct |
21258741 |
T |
|
| Q |
218 |
aaacacatgaaacatcggtaaaacgcagaggaacacgtttaattcccctgctaaatcatcatccatgtttattatcaatgaagtcgcgatgaagttcttg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21258740 |
aaacacatgaaacatcggtaaaacgcagaggaacacatttaattcccctgctaaatcatcatccatgtttatcatcaatgaagtcgcgatgaagttcttg |
21258641 |
T |
|
| Q |
318 |
tgggtgagtatcacacctttgctcactcctgtagttcctgatga |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21258640 |
tgggtgagtatcacacctttgctcactcctgtagttcctgatga |
21258597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 97 - 361
Target Start/End: Complemental strand, 21254357 - 21254088
Alignment:
| Q |
97 |
cccacaagttcgtcactttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgc |
196 |
Q |
| |
|
||||||| ||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||||| || |
|
|
| T |
21254357 |
cccacaaattcgtcactctatgcttctcaatcaccttcaaaaa-ccctctaactcaaacctccccgttgaaaccaccgtacttcctctccttagctgcgc |
21254259 |
T |
|
| Q |
197 |
gtatgttataaccgccaatccaaacacatg---aaacatcggtaaaacgcagaggaacac---gtttaattcccctgctaaatcatcatccatgtttatt |
290 |
Q |
| |
|
||||||||||||| |||||| ||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||| || |
|
|
| T |
21254258 |
gtatgttataaccaccaatctaaacacatgaataaacatcggtaaaacgcagaagaacacgttgtttaattcccctgctaaatcatcgtccatgttaatc |
21254159 |
T |
|
| Q |
291 |
atcaatgaagtcgcgatgaagttcttgtgggtgagtatcacacctttgctcactcctgtagttcctgatga |
361 |
Q |
| |
|
|| || | ||| |||| |||||||||||| |||||||| || |||||||||||||| ||||||||||| |
|
|
| T |
21254158 |
attaacgccaccgcaatgacgttcttgtgggtaagtatcacgcccttgctcactcctgttgttcctgatga |
21254088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University