View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19587_low_16 (Length: 363)
Name: NF19587_low_16
Description: NF19587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19587_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 56164687 - 56165035
Alignment:
| Q |
1 |
atttattaatgcagcaatacaaagaggaattgaaaacctagacattgacaggttggaggatgttaatggattaaccagtagcatttttagttgcaagaca |
100 |
Q |
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| T |
56164687 |
atttattaatgcagcaatacaaagaggaattgaaaacctagacattgacatgttggaggatgttaatggattaaccagtagcatttttagttgcaagaca |
56164786 |
T |
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| Q |
101 |
ctcactgttctcaaactg---aaaaacctgtttgtgaaagatgacaattaccaagtagatcttcctttactcaaagttctctgtatagatattatgaggt |
197 |
Q |
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| T |
56164787 |
ctcactgttctcaaattgttgaaaaacctgtttgtgaaagatgacaattaccaagtagatcttcctttactcaaagttctctgtatagatattatgaggt |
56164886 |
T |
|
| Q |
198 |
tcagttatcaagcaactattaccaagtttttcttaggttgtcccgttatagaggaattgcgaacaaagattgctgcgttttatttgaggaagcttaatcc |
297 |
Q |
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| T |
56164887 |
tcagttatcaagcaactattaccaagtttttcttaggttgtcccgttatagaggaattgcgaacaaagattgctgcgttttatttgaggaagcttaatcc |
56164986 |
T |
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| Q |
298 |
agaaacacccaacttgatgagaacaagtattccaagtcaatatatttct |
346 |
Q |
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| T |
56164987 |
agaaacacccaacttgatgagaacaagtattccaagtcaatatatttct |
56165035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 44253419 - 44253562
Alignment:
| Q |
20 |
caaagaggaattgaaaacctagacattgacaggttggaggatgttaatggattaaccagtagcatttttagttgcaagacactcactgttctcaaactga |
119 |
Q |
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||||||||||| ||| | ||||||||||||| ||||||| |||||||||||||||| ||||||||| |||||||||||||||||||| |||||| ||| |
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| T |
44253419 |
caaagaggaatcgaagaactagacattgacatgttggagaatgttaatggattaacagatagcattttcagttgcaagacactcactgtcctcaaattga |
44253518 |
T |
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| Q |
120 |
aaaacctgtttgtgaaagatgacaattaccaagtagatcttcct |
163 |
Q |
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| T |
44253519 |
aaaacctatcgatgagagacgacaattgtcaaatagatcttcct |
44253562 |
T |
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