View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19587_low_2 (Length: 583)
Name: NF19587_low_2
Description: NF19587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19587_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 1 - 571
Target Start/End: Complemental strand, 48250433 - 48249854
Alignment:
| Q |
1 |
aaatcgaaagatttgaaagagaattctgaagaggagtggtctgtgattgacttgaaagatgataagagtttgatgaacaaggagaatttgaattctaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48250433 |
aaatcgaaagatttgaaagagaattctgaagaggagtggtctgtgattgacttgaaagatgataagagtttgatgaacaaggagaatttgaattctaagg |
48250334 |
T |
|
| Q |
101 |
gaaaatcaagtcatggatcagctttgaaacagattaaaggagcagcttcggttttcgggtttgtatcttcaaacaaacatgaaaagagtatatttgattc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48250333 |
gaaaatcaagtcatggatcagctttgaaacagattaaaggagcagcttcggtttttgggtttgtatcttcaaacaaacatgaaaagagtatatttgattc |
48250234 |
T |
|
| Q |
201 |
acctcctttgcataaacaacaaagtgatgggaaaactattcttatggaggaaagtgagcctccgaaaccggcgaaggaaagcggtggtggttcgtcgaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48250233 |
acctcctttgcataaacaacaaagtgatgggaaaactattcttatggaggaaagtgagcctccgaaaccggcgaaggaaagcggtggtggttcgtcgaag |
48250134 |
T |
|
| Q |
301 |
aggaaaccatttaggactttgtttcataa---------agagggaaatggtggtgggtctgaggtagaacaaagaggagggaaatcagtgaaaaaacaat |
391 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48250133 |
aggaaaccatttaggactttgtttcataaagagcataaagagggaaatggtggtgggtctgaggtagaacaaagaggagggaaatcagtgaaaaaacaat |
48250034 |
T |
|
| Q |
392 |
gggggtttgatggattgaagaaatggaagagaaatgaattggatgatgatgagactgctcctttgcctctgaatcagagatctgatagtgaggctttctc |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48250033 |
gggggtttgatggattgaagaaatggaagagaaatgaattggatgatgatgagactgctcctttgcctctgaatcagagatctgatagtgaggctttctc |
48249934 |
T |
|
| Q |
492 |
agcttcatctcagtcttttgcaagagcagttggcgatggaccggataccaagttgatcaagaagaagttgcattctgatg |
571 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48249933 |
agcttcatctcagtcttttgcaagagcagttggcgatgggccggataccaagttgatcaagaagaagttgcattctgatg |
48249854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 179; Significance: 3e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 4632171 - 4631937
Alignment:
| Q |
1 |
aaatcgaaagatttgaaagagaattctgaagaggagtggtctgtgattgacttgaaagatgataagagtttgatgaacaaggagaatttgaattctaagg |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| | |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4632171 |
aaatcgaaagatttaaaagagaattctgaagagaaatggtatgtgattgatttgaaagatgataagagtttgatgaacaaggagaatttgaattctaagg |
4632072 |
T |
|
| Q |
101 |
gaaaatcaagtcatggatcagctttgaaacagattaaaggagcagcttcggttttcgggtttgtatcttcaaacaaacatgaaaagagtatatttgattc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | ||||||| ||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
4632071 |
gaaaatcaagtcatggatcagctttgaaacatattaatggagcagcttcggtttccaggtttgtttcttctaacaagcatgaaaagagcatatttgattc |
4631972 |
T |
|
| Q |
201 |
acctcctttgcataaacaacaaagtgatgggaaaa |
235 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4631971 |
acctcctttgcataaacaacaaagtgaagggaaaa |
4631937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University