View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19587_low_20 (Length: 305)

Name: NF19587_low_20
Description: NF19587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19587_low_20
NF19587_low_20
[»] chr5 (1 HSPs)
chr5 (1-300)||(5387172-5387471)


Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 5387172 - 5387471
Alignment:
Q  1 caatcaagaccagctcattcctcactgatccactccactcacggccacctatataatgaaggcataaatacaatgtggatgtatgtggcttggatggagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5387172 caatcaagaccagctcattcctcactgatccactccactcacggccacctatataatgaaggcataaatacaatgtggatgtatgtggcttggatggagc 5387271  T
Q  101 cagatgcatagcgaacaataatttccttgctgcttggagaagcagttttgtacccacagactgtgttacatacatacctacaacaaacaagaaagacacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  5387272 cagatgcatagcgaacaataatttccttgctgcttggagaagcagttttgtactcatagactgtgttacatacatacctacaacaaacaagaaagacacc 5387371  T
Q  201 gttcaagcatcgtcaggattcaggcccgcaggtacccattcttctccaagtaggatattactttttctgccgcattacttggagacatacagtcactttc 300  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5387372 gttcaagcatcgtcaggactcaggcccgcaggtacccattcttctccaagtaggatattactttttctgccgcattacttggagacatacagtcactttc 5387471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University