View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19587_low_21 (Length: 296)
Name: NF19587_low_21
Description: NF19587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19587_low_21 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 11 - 296
Target Start/End: Complemental strand, 38181478 - 38181193
Alignment:
| Q |
11 |
atgaacagataaagagatatatatgttgataaagataaaagttctacgaatatagatagaatataattaaaatgctaattaatatagctgttttattaga |
110 |
Q |
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| T |
38181478 |
atgaacagataaagagatatatatgttgataaagataaaagttctacaaatatagatagaatataattaaaatgctaattaatatagctgttttattaga |
38181379 |
T |
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| Q |
111 |
atgcaggattccagttacattattgtagacatctgtttagacaaacagggtcaccacattatattctagatagtgtctttgatcatcttaaactcaatac |
210 |
Q |
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| T |
38181378 |
atgtaggattccagttacattattttagacatctgtttagacaaacagggtcaccacattatagtctagatagtgtctttcatcatgttaaactcaatac |
38181279 |
T |
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| Q |
211 |
ttgatcttcctagaacttggaaaagcttgacctgtagaaggtggcacagtactttctggaccagcatgaactggaactggttcacc |
296 |
Q |
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| T |
38181278 |
ttgatcttcctagaacttggaaaagcttgacctgtagaaggtggcacagtactttctggaccagcatgaactggaactggttcacc |
38181193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 288
Target Start/End: Complemental strand, 21008388 - 21008261
Alignment:
| Q |
161 |
tcaccacattatattctagatagtgtctttgatcatcttaaactcaatacttgatcttcctagaacttggaaaagcttgacctgtagaaggtggcacagt |
260 |
Q |
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| T |
21008388 |
tcaccagattatagtctagatagagtcattcatcgtgttaaactcaaaacttcatcttcctagaacttggaatagcatgacatggagaaggtagcacagt |
21008289 |
T |
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| Q |
261 |
actttctggaccagcatgaactggaact |
288 |
Q |
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| T |
21008288 |
gctttcaggaatagcatgaactggaact |
21008261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 260
Target Start/End: Complemental strand, 20951831 - 20951647
Alignment:
| Q |
64 |
agatagaatataattaaaatgctaattaatatagctgttttattagaatgcaggattccagttacattattgtagacatctgtttagacaaacagggtca |
163 |
Q |
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| T |
20951831 |
agatagaataaaaataaaatgctaattaatatatctgttttattagaatgtggaattcaaattatattattgttgacatctat----------aaggtca |
20951742 |
T |
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| Q |
164 |
ccacattatattctagatagtgtctttgatcatcttaaactcaatacttgatcttcctagaacttggaaaagcttgacctgtagaaggtggcacagt |
260 |
Q |
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| T |
20951741 |
ccacattctagtctagatagagtctttcatcatgttaaactca--acttcatcttccttgaacttggaatagcatgacatggagaaggtagcacagt |
20951647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 38181169 - 38181100
Alignment:
| Q |
227 |
ttggaaaagcttgacctgtagaaggtggcacagtactttctggaccagcatgaactggaactggttcacc |
296 |
Q |
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| T |
38181169 |
ttggaaaagcttgttttgtagaaggtggcgcagttctttctggaatagcatgaactggaactggttcacc |
38181100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 7385713 - 7385633
Alignment:
| Q |
152 |
caaacagggtcaccacattatattctagatagtgtctttgatcatcttaaactcaatacttgatcttcctagaacttggaa |
232 |
Q |
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| T |
7385713 |
caaaaagggttaccacattatagtctagatctagtctttcatcatattaatctccaaactcgatcttcctagaacttggaa |
7385633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 38181076 - 38181034
Alignment:
| Q |
227 |
ttggaaaagcttgacctgtagaaggtggcacagtactttctgg |
269 |
Q |
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| T |
38181076 |
ttggaagagcttgacgagtagaaggtggcacagtactttctgg |
38181034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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