View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19587_low_22 (Length: 282)
Name: NF19587_low_22
Description: NF19587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19587_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 11135627 - 11135881
Alignment:
| Q |
18 |
ctttggtctcacgttgactgctctatgctgtgtagtggttgttcttggagggttacccttctcctcagatgcacaacttgatccttccttctatagggac |
117 |
Q |
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| T |
11135627 |
ctttggtctcacgttgactgctctatgctgtgtagtggttgttcttggagggttacccttctcctcagatgcacaacttgatccttccttctatagggac |
11135726 |
T |
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| Q |
118 |
acttgtccaaaggttcattccattattcgtgaagtcataaggaacgtctctaagacagatcctcgtatgcttgctagtctcgtcagacttcactttcatg |
217 |
Q |
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| T |
11135727 |
acttgtccaaaggttcattccattattcgtgaagtcataaggaacgtctctaagactgatcctcgcatgcttgctagtctcgtcagacttcactttcatg |
11135826 |
T |
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| Q |
218 |
actgttttgttctggtatatactctctccatattcattctttcccatgtcctttg |
272 |
Q |
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| T |
11135827 |
actgttttgttctggtatatactctctccatattcattctttcccatgtcttttg |
11135881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 43 - 229
Target Start/End: Original strand, 11148249 - 11148435
Alignment:
| Q |
43 |
tgctgtgtagtggttgttcttggagggttacccttctcctcagatgcacaacttgatccttccttctatagggacacttgtccaaaggttcattccatta |
142 |
Q |
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| T |
11148249 |
tgctgtattgtggttgtgcttggagggttacccttctcttcaaatgcacaacttgatccatccttttacaggaacacttgtccaaatgttagttccattg |
11148348 |
T |
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| Q |
143 |
ttcgtgaagtcataaggaacgtctctaagacagatcctcgtatgcttgctagtctcgtcagacttcactttcatgactgttttgttc |
229 |
Q |
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| T |
11148349 |
ttcgtgaagtcataagaagtgtttctaagaaagatcctcgtatgcttggtagtcttgtcaggcttcactttcatgactgttttgttc |
11148435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 43 - 229
Target Start/End: Original strand, 11170874 - 11171060
Alignment:
| Q |
43 |
tgctgtgtagtggttgttcttggagggttacccttctcctcagatgcacaacttgatccttccttctatagggacacttgtccaaaggttcattccatta |
142 |
Q |
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| T |
11170874 |
tgctgtgtagtagttgtgcttggagggttacccttctcatcaaatgcacaacttgataattccttctatagggacacttgtcctaatgttcattccattg |
11170973 |
T |
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| Q |
143 |
ttcgtgaagtcataaggaacgtctctaagacagatcctcgtatgcttgctagtctcgtcagacttcactttcatgactgttttgttc |
229 |
Q |
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| T |
11170974 |
ttcgtgaagtactaagaaatgtttctaagacagatcctcgtatacttgctagtttgataaggcttcacttccatgattgctttgttc |
11171060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 86 - 229
Target Start/End: Original strand, 11145012 - 11145155
Alignment:
| Q |
86 |
atgcacaacttgatccttccttctatagggacacttgtccaaaggttcattccattattcgtgaagtcataaggaacgtctctaagacagatcctcgtat |
185 |
Q |
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| T |
11145012 |
atgcacaacttaatccatccttttatagcaaaacttgtccaaatgttagttccattgtccgggaagtcataagaaacgtttctaagacagatactcgtat |
11145111 |
T |
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| Q |
186 |
gcttgctagtctcgtcagacttcactttcatgactgttttgttc |
229 |
Q |
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|||||| ||||| || || |||||||| |||||||||||||||| |
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| T |
11145112 |
gcttgcaagtcttgttaggcttcacttccatgactgttttgttc |
11145155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 43 - 128
Target Start/End: Complemental strand, 11192474 - 11192389
Alignment:
| Q |
43 |
tgctgtgtagtggttgttcttggagggttacccttctcctcagatgcacaacttgatccttccttctatagggacacttgtccaaa |
128 |
Q |
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| T |
11192474 |
tgctgtgtagtggttgtgcttggagggtttcccttctcttcaaatgcacaacttgatcctaacttctataaggacacatgtccaaa |
11192389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 11154835 - 11154904
Alignment:
| Q |
166 |
tctaagacagatcctcgtatgcttgctagtctcgtcagacttcactttcatgactgttttgttctggtat |
235 |
Q |
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| T |
11154835 |
tctaagacagatcaacgcatgcttgctagcctcgtcaggcttcactttcatgactgttttgttttggtat |
11154904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 11109294 - 11109352
Alignment:
| Q |
43 |
tgctgtgtagtggttgttcttggagggttacccttctcctcagatgcacaacttgatcc |
101 |
Q |
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| T |
11109294 |
tgctgtgtagtggttgtgtttggaggactacccttctcttcaaatgcacaacttgatcc |
11109352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 11192357 - 11192288
Alignment:
| Q |
160 |
aacgtctctaagacagatcctcgtatgcttgctagtctcgtcagacttcactttcatgactgttttgttc |
229 |
Q |
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| T |
11192357 |
aacgtttctcagacagatcctcgtatccttgccagtttcattaggcttcattttcatgattgttttgttc |
11192288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 11198159 - 11198204
Alignment:
| Q |
48 |
tgtagtggttgttcttggagggttacccttctcctcagatgcacaa |
93 |
Q |
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| T |
11198159 |
tgtagtggttgttcttggagggttacctttgttctcaaatgcacaa |
11198204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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