View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19587_low_23 (Length: 272)
Name: NF19587_low_23
Description: NF19587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19587_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 16648574 - 16648799
Alignment:
| Q |
9 |
tatttttgtcattttcaacggaatctataaattgtgcttttgtaactatttttggtctaaaaccaatggatttgttagtaacccaaaaaggatagttata |
108 |
Q |
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| T |
16648574 |
tatttttgtcatttttaacggaatctataaattgtgcttttgtaactatttttggtctaaaaccaaaggatttgttagtaacccaaaaaggatagttata |
16648673 |
T |
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| Q |
109 |
tcttaaagatacaaatttttattgaatagacacttttaaaacaaaatatatacatgagctggactttttgctctaa-ctaagtttttgaaaagaattcgg |
207 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||| |||| |
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| T |
16648674 |
tcttaaagatacaaatttttattgaatagaaacttttaaaacaaaatatatacgtgagctggactttttgctctaaccaaagtttttgaaaagaaatcgg |
16648773 |
T |
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| Q |
208 |
tgtatcatgtttttagtcctttagat |
233 |
Q |
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| T |
16648774 |
tgtatcatgtttttagtcctttagat |
16648799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 21031104 - 21031171
Alignment:
| Q |
39 |
attgtgcttttgtaactatttttggtctaaaaccaatggatttgttagtaacccaaaaaggatagtta |
106 |
Q |
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| T |
21031104 |
attgtgcctttgtaactacttttagtctaaaaccaatgacttagttagtaacccaaaaaggatagtta |
21031171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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