View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19587_low_26 (Length: 250)

Name: NF19587_low_26
Description: NF19587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19587_low_26
NF19587_low_26
[»] chr8 (1 HSPs)
chr8 (1-236)||(5799445-5799680)
[»] chr2 (2 HSPs)
chr2 (12-61)||(5388818-5388867)
chr2 (13-61)||(37804395-37804443)
[»] chr1 (2 HSPs)
chr1 (13-69)||(28942062-28942118)
chr1 (19-65)||(35310308-35310353)
[»] chr5 (2 HSPs)
chr5 (12-61)||(18167389-18167438)
chr5 (13-61)||(14325876-14325924)
[»] chr7 (1 HSPs)
chr7 (15-55)||(46877666-46877706)
[»] chr3 (2 HSPs)
chr3 (12-68)||(21555451-21555506)
chr3 (5-65)||(31310001-31310061)


Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 5799680 - 5799445
Alignment:
Q  1 actacattcgggttctatatataagaaaaagttgcgtcaacaaaaattaatgtatttgatttaaatttttgtaacacaatgttttcttatatatatgatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5799680 actacattcgggttctatatataagaaaaagttgcgtcaacaaaaattaatgtatttgatttaaatttttgtaacacaatgttttcttatatatatgatc 5799581  T
Q  101 aggggcagggagtttaatcttattcatgattattgtgcttgtgcgttaattaggagaagcaacgaggataaggatttgtaaaggaagggtgtttgcccta 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5799580 agaggcagggagtttaatcttattcatgattattgtgcttgtgcgttaattaggagaagcaacgaggataaggatttgtaaaggaagggtgtttgcccta 5799481  T
Q  201 gacaacgattcagcagttcctcgactttggcttccc 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  5799480 gacaacgattcagcagttcctcgactttggcttccc 5799445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 5388818 - 5388867
Alignment:
Q  12 gttctatatataagaaaaagttgcgtcaacaaaaattaatgtatttgatt 61  Q
    ||||| ||||| |||||||| || ||||||||||||||||||||||||||    
T  5388818 gttctttatatgagaaaaagctgggtcaacaaaaattaatgtatttgatt 5388867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 37804443 - 37804395
Alignment:
Q  13 ttctatatataagaaaaagttgcgtcaacaaaaattaatgtatttgatt 61  Q
    |||||| ||||||||||| |||  ||||||||||||||||||| |||||    
T  37804443 ttctatttataagaaaaatttggatcaacaaaaattaatgtatctgatt 37804395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 28942062 - 28942118
Alignment:
Q  13 ttctatatataagaaaaagttgcgtcaacaaaaattaatgtatttgatttaaatttt 69  Q
    |||||||||||||| ||| |||  |||| |||||||||||||||||| |||||||||    
T  28942062 ttctatatataagataaaattgaatcaataaaaattaatgtatttgacttaaatttt 28942118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 35310353 - 35310308
Alignment:
Q  19 atataagaaaaagttgcgtcaacaaaaattaatgtatttgatttaaa 65  Q
    ||||||| |||| ||| ||||||||||||||||||||||||||||||    
T  35310353 atataagtaaaaattg-gtcaacaaaaattaatgtatttgatttaaa 35310308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 18167438 - 18167389
Alignment:
Q  12 gttctatatataagaaaaagttgcgtcaacaaaaattaatgtatttgatt 61  Q
    ||||||| ||||||||||||||  ||||||||||||| | ||||||||||    
T  18167438 gttctatttataagaaaaagtttggtcaacaaaaattgacgtatttgatt 18167389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 14325876 - 14325924
Alignment:
Q  13 ttctatatataagaaaaagttgcgtcaacaaaaattaatgtatttgatt 61  Q
    |||||| ||||||||||| ||   |||||||||||||||||||||||||    
T  14325876 ttctatttataagaaaaaatttgatcaacaaaaattaatgtatttgatt 14325924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 46877706 - 46877666
Alignment:
Q  15 ctatatataagaaaaagttgcgtcaacaaaaattaatgtat 55  Q
    |||||||||||| ||||||| |||||||||| |||||||||    
T  46877706 ctatatataagagaaagttgggtcaacaaaagttaatgtat 46877666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 21555451 - 21555506
Alignment:
Q  12 gttctatatataagaaaaagttgcgtcaacaaaaattaatgtatttgatttaaattt 68  Q
    |||||||||||||||||| ||||  |||| ||||||||||||||| | |||||||||    
T  21555451 gttctatatataagaaaa-gttgaatcaataaaaattaatgtattaggtttaaattt 21555506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 31310001 - 31310061
Alignment:
Q  5 cattcgggttctatatataagaaaaagttgcgtcaacaaaaattaatgtatttgatttaaa 65  Q
    ||||| ||| |||||||||| | ||||||  ||||| ||||||| ||||||||||||||||    
T  31310001 cattccggtcctatatataaaagaaagttaggtcaataaaaattgatgtatttgatttaaa 31310061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University