View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19587_low_27 (Length: 250)
Name: NF19587_low_27
Description: NF19587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19587_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 2499115 - 2499362
Alignment:
| Q |
1 |
atgaaccatgaacaatcctagtaaactcatctttattctctaatcttgaatctgatgcaatgaaatgaaaaaacaaattcttaggacatgaagtgtgttt |
100 |
Q |
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| T |
2499115 |
atgaaccatgaacaatcctagtaaactcatctttattctctaatcttgaatctgatgcaatgaaatgaaaaaacaaattcttaggacatgaagtgtgttt |
2499214 |
T |
|
| Q |
101 |
gagaacagaatgaattgcagccatagagcctctcaaataatcccaatcaatagtcattgaaatatgaacaagtgaaggatcacatacatattgatcaata |
200 |
Q |
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| T |
2499215 |
gagaacagaatgaattgcagccatagagcctctcaaataatcccaatcaatagtcattgaaatatgaacaagtgaaggatcacatacatattgatcaata |
2499314 |
T |
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| Q |
201 |
tcaatttttctatcaactactttgcatttttgcatatttctattttct |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2499315 |
tcaatttttctatcaactactttgcatttttgcatatttctatattct |
2499362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 27101703 - 27101950
Alignment:
| Q |
1 |
atgaaccatgaacaatcctagtaaactcatctttattctctaatcttgaatctgatgcaatgaaatgaaaaaacaaattcttaggacatgaagtgtgttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27101703 |
atgaaccatgaacaatcctagtaaactcatctttattctctaatcttgaatctgatgcaatgaaatgaaaaaacaaattcttaggacatgaagtgtgttt |
27101802 |
T |
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| Q |
101 |
gagaacagaatgaattgcagccatagagcctctcaaataatcccaatcaatagtcattgaaatatgaacaagtgaaggatcacatacatattgatcaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27101803 |
gagaacagaatgaattgcagccatagagcctctcaaataatcccaatcaatagtcattgaaatatgaacaagtgaaggatcacatacatattgatcaata |
27101902 |
T |
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| Q |
201 |
tcaatttttctatcaactactttgcatttttgcatatttctattttct |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27101903 |
tcaatttttctatcaactactttgcatttttgcatatttctatattct |
27101950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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