View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19587_low_29 (Length: 238)
Name: NF19587_low_29
Description: NF19587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19587_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38743507 - 38743728
Alignment:
| Q |
1 |
ccatcgttatcaaacacatcaactttctgattgagttcaaaccttaaaggattacgaacacgtggtggtaatgggcgaagatcttttggaaaaagtgttt |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
38743507 |
ccatcgttatcaaacacgtcaactttctgattgagttcaaacctcgaaggattacgaacacgtggcggtaatggacgaagatcttttggaaaaagtgttt |
38743606 |
T |
|
| Q |
101 |
ccataagaagttccgattcgtcatctttaagaagattcttgtaacggatcacatattttccgctctcaagacatgaaacaattgtagcttcaaagtatga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
38743607 |
ccataagaagttccgattcgtcatctttaagaagattcttgtaacggatcacatattttccactctctagacatgaaacaattgtagcttcaaagtatga |
38743706 |
T |
|
| Q |
201 |
acctacaaacccttcttctttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
38743707 |
acctacaaacccttcttctttg |
38743728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 38788900 - 38788679
Alignment:
| Q |
1 |
ccatcgttatcaaacacatcaactttctgattgagttcaaaccttaaaggattacgaacacgtggtggtaatgggcgaagatcttttggaaaaagtgttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
38788900 |
ccatcgttatcaaacacatcaactttctgattgagttcaaacctccaaggattatgaacacgtggcggtaatggacgaagatcttttggaaaaagtgttt |
38788801 |
T |
|
| Q |
101 |
ccataagaagttccgattcgtcatctttaagaagattcttgtaacggatcacatattttccgctctcaagacatgaaacaattgtagcttcaaagtatga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || |
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| T |
38788800 |
ccataagaagttccgattcgtcatctttaagaagattcttgtaacggatcacatattttccactctctagacatgaaacaattgtagcttcaaagtacga |
38788701 |
T |
|
| Q |
201 |
acctacaaacccttcttctttg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
38788700 |
acctacaaacccttcttctttg |
38788679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 38782728 - 38782509
Alignment:
| Q |
1 |
ccatcgttatcaaacacatcaactttctgattgagttcaaaccttaaaggattacgaacacgtggtggtaatgggcgaagatcttttggaaaaagtgttt |
100 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| |||| | ||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||| |
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| T |
38782728 |
ccatcgttatcaaatacatcaactttttgattgagtttaaacttcaaaggattacgaacatgtggtggtattggacgaagatcttttggaaaaagtgttt |
38782629 |
T |
|
| Q |
101 |
ccataagaagttccgattcgtcatctttaagaagattcttgtaacggatcacatattttccgctctcaagacatgaaacaattgtagcttcaaagtatga |
200 |
Q |
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|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38782628 |
ccataagaagttccgactcgtcatctttaagaagattcttgtaacggatcacatattttccgctctcaagacatgaaacaattgtagcttcaaagtatga |
38782529 |
T |
|
| Q |
201 |
acctacaaacccttcttctt |
220 |
Q |
| |
|
||||||||||||||| |||| |
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|
| T |
38782528 |
acctacaaacccttcatctt |
38782509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 30962923 - 30963143
Alignment:
| Q |
1 |
ccatcgttatcaaacacatcaactttctgattgagttcaaaccttaaaggattacgaacacgtggtggtaatgggcgaagatcttttggaaaaagtgttt |
100 |
Q |
| |
|
||||| |||| ||| ||||||||||| |||||||||| |||| | ||||||| ||||||||||| || |||| ||||||||||||| |||||||||| |
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| T |
30962923 |
ccatctttataaaaaacatcaactttttgattgagttgaaacttagaaggatttcgaacacgtggctgtgatggacgaagatcttttgataaaagtgttt |
30963022 |
T |
|
| Q |
101 |
ccataagaagttccgattcgtcatctttaagaagattcttgtaacggatcacatattttccgctctcaagacatgaaacaattgtagcttcaaagtatga |
200 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||| ||||| |
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| T |
30963023 |
ccataagaagttgagattcgtcgtctttaagaagattcttgtaacgaatcacatattttccactctcaaggcatgaaacaattgtggcttcaaaatatga |
30963122 |
T |
|
| Q |
201 |
acctacaaacccttcttcttt |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
30963123 |
acctacaaacccttcttcttt |
30963143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 5963683 - 5963737
Alignment:
| Q |
168 |
aagacatgaaacaattgtagcttcaaagtatgaacctacaaacccttcttctttg |
222 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5963683 |
aagacacgaaacaattgtagcttcaaagtatgaacccacaaacccttcttctttg |
5963737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 2914844 - 2914702
Alignment:
| Q |
1 |
ccatcgttatcaaacacatcaactttctgattgagttcaaaccttaaaggattacgaacacgtggtggtaatgggcgaagatcttttggaaaaagtgttt |
100 |
Q |
| |
|
|||||||| ||||| |||| ||||||||| ||||||| ||| | |||| ||||||| |||||||||| | | | |||||||||| |||||||| | | |
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| T |
2914844 |
ccatcgttgtcaaaaacataaactttctggttgagtttgaacttagaaggcctacgaactcgtggtggtactagacaaagatcttttagaaaaagtatct |
2914745 |
T |
|
| Q |
101 |
ccataagaagttccgattcgtcatctttaagaagattcttgta |
143 |
Q |
| |
|
|| | |||||||| || || |||||||||||||| |||||||| |
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|
| T |
2914744 |
ccgtgagaagttcagactcatcatctttaagaaggttcttgta |
2914702 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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