View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19587_low_3 (Length: 557)
Name: NF19587_low_3
Description: NF19587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19587_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 78 - 542
Target Start/End: Complemental strand, 18209785 - 18209323
Alignment:
| Q |
78 |
cactgaatcctaaatgtctggttcatggagattgaagaaattgggtaacaaagcagatagttccaccattagagcaagtttaaacaactctagtgtcttt |
177 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
18209785 |
cactgaatcctaaatgtctgattcatggagattgaagaaattcgataacaaagcagatagttccagcattagagcaagtt-aaacaactctagtgtcttt |
18209687 |
T |
|
| Q |
178 |
aggctcaactttgacacgaacagccctgttaggttttgtaaccgatgcctgaccagcttcaccatgttcaacagccacagagtcaatgctatcagaggac |
277 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
18209686 |
aggctcaatcttgacacgaacatccctgttaggttttgtaaccgatgcctgaccagcttcaccgtgatcaacagccacagagtcaatgctatcagaggac |
18209587 |
T |
|
| Q |
278 |
cgcttaagacttgtcttgctggttggtgtgccaatcacacaggtattgctgcaagagtcttgagcctcatgtaaatcctgcagacatttgtgtaaaacaa |
377 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||| ||||||||||||||||||| ||| || |
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| T |
18209586 |
cgcttaagacctgtcttgctggttggtgtgccaatcacacaggtattgctgcatgagtcttcagcctcttgtacatcctgcagacatttgtgttaaaaaa |
18209487 |
T |
|
| Q |
378 |
aattgtttaaatttcatacagattaaattttctacattttattagcaattcttgatttatatataattaatcaatgaagtgccacctcaacattataatt |
477 |
Q |
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| ||||||||||||| ||||||||||||||||| ||||| ||| |||||| | || ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
18209486 |
atttgtttaaatttcctacagattaaattttctgcatttgattggcaattgtaga-ttatatataattaatcaatgaagtgccacctgaacattataatt |
18209388 |
T |
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| Q |
478 |
gtttgttgcaacaccattcagactaagctcttcaacagatccatcgttgggtttctatcacacat |
542 |
Q |
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| T |
18209387 |
gttggctgcaacaccattcacactaagttcttcaacagatccatcgttgggtttctatcacacat |
18209323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 78 - 542
Target Start/End: Original strand, 37898996 - 37899458
Alignment:
| Q |
78 |
cactgaatcctaaatgtctggttcatggagattgaagaaattgggtaacaaagcagatagttccaccattagagcaagtttaaacaactctagtgtcttt |
177 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
37898996 |
cactgaatcctaaatgtctgattcgtggagattgaagaaattcggtaacaaagcagatagttccagcattagagcaagtt-aaacaactctagtgtcttt |
37899094 |
T |
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| Q |
178 |
aggctcaactttgacacgaacagccctgttaggttttgtaaccgatgcctgaccagcttcaccatgttcaacagccacagagtcaatgctatcagaggac |
277 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
37899095 |
aggctcaatcttgacacgaacagccctgttaggttttgtaaccgatgcctgaccagcttcaccgtgatcaacagccacagagtcaatgctatcagaggac |
37899194 |
T |
|
| Q |
278 |
cgcttaagacttgtcttgctggttggtgtgccaatcacacaggtattgctgcaagagtcttgagcctcatgtaaatcctgcagacatttgtgtaaaacaa |
377 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| | |||| |||| ||||||||||||||||||| ||| || |
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| T |
37899195 |
cgcttaagacctgtcttgctggttggtgtgccaatcacacaggtattgctgcatgagtcttcaacctcttgtacatcctgcagacatttgtgttaaaaaa |
37899294 |
T |
|
| Q |
378 |
aattgtttaaatttcatacagattaaattttctacattttattagcaattcttgatttatatataattaatcaatgaagtgccacctcaacattataatt |
477 |
Q |
| |
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| | ||||||||||| ||||||||||||||||| ||||| ||| |||||| | || ||||| |||| |||||||||||||||||||| |||||||||||| |
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| T |
37899295 |
attggtttaaatttcctacagattaaattttctgcatttgattggcaattgtaga-ttatacataaataatcaatgaagtgccacctgaacattataatt |
37899393 |
T |
|
| Q |
478 |
gtttgttgcaacaccattcagactaagctcttcaacagatccatcgttgggtttctatcacacat |
542 |
Q |
| |
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||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37899394 |
gtttgctgcaacaccattcacactaagctcttcaacagatccatcgttgggtttctatcacacat |
37899458 |
T |
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