View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19587_low_30 (Length: 223)
Name: NF19587_low_30
Description: NF19587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19587_low_30 |
 | |
|
| [»] scaffold1026 (1 HSPs) |
| | |
|
| [»] scaffold0836 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 26196601 - 26196414
Alignment:
| Q |
17 |
ataggaaagaagatatttagggagttcttcattaacatgaaattcgtcaaacataactttgacctctgctcttatgacaccccaaaaagatttgagaaaa |
116 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26196601 |
ataggaaagaagatatttaaggagttcttcattaacatgaaatttgtcaaacataactttgaccactgctcttatgacaccccaaaaagatttgagaaaa |
26196502 |
T |
|
| Q |
117 |
gcaaagttaaacccattcagatcccgattttgttaccatctgctaagaaaatcaaatctttaatttcctcctccgtgaaaggcctaga |
204 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26196501 |
gcaaagttaaacccattcagaccccgattttgttaccatctgctaagaaaatcaaatctttaatttcctcctccgtgaaaggcctaga |
26196414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1026 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1026
Description:
Target: scaffold1026; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 1426 - 1492
Alignment:
| Q |
17 |
ataggaaagaagatatttagggagttcttcattaacatgaaattcgtcaaacataactttgacctctg |
84 |
Q |
| |
|
|||| |||||||| |||||||||||| ||||||| ||| ||||| |||||||||||| || ||||||| |
|
|
| T |
1426 |
atagaaaagaagaaatttagggagtt-ttcattagcataaaatttgtcaaacataacctttacctctg |
1492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0836 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0836
Description:
Target: scaffold0836; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 3438 - 3374
Alignment:
| Q |
17 |
ataggaaagaagatatttagggagttcttcattaacatgaaattcgtcaaacataactttgacctc |
82 |
Q |
| |
|
|||| |||||||| |||||||||||| ||||||| ||| ||||| |||||||||||| || ||||| |
|
|
| T |
3438 |
atagaaaagaagaaatttagggagtt-ttcattagcataaaatttgtcaaacataacctttacctc |
3374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University