View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19587_low_32 (Length: 206)
Name: NF19587_low_32
Description: NF19587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19587_low_32 |
 |  |
|
| [»] chr2 (5 HSPs) |
 |  |
|
| [»] chr4 (6 HSPs) |
 |  |
|
| [»] chr5 (3 HSPs) |
 |  |
|
| [»] chr3 (3 HSPs) |
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| [»] scaffold0065 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
 |  |
|
Alignment Details
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 72 - 206
Target Start/End: Complemental strand, 8761387 - 8761251
Alignment:
| Q |
72 |
gttgagagaatatattcccattacctatat--aagttaaagtgtgttgaaatatgccttgaatttgcgttgggaaaatgtcccacatcagataatattaa |
169 |
Q |
| |
|
||||||||||| |||||||||||| ||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
8761387 |
gttgagagaatctattcccattac-tatatggaagttaaagtgtgttgaaatatgtcttgaatttgtgttgggaaaatgtcccacatcagataatatgaa |
8761289 |
T |
 |
| Q |
170 |
gaaatatgcaaata-tttggtcatataaataaaagtct |
206 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8761288 |
gaaatatgcaaatactttggtcatataaataaaagtct |
8761251 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 37965653 - 37965560
Alignment:
| Q |
113 |
tgttgaaatatgccttgaatttgcgttgggaaaatgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaaagtct |
206 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||| |||||| |||||||| |||||||||||||| | |||| |||||||||||||||| |
|
|
| T |
37965653 |
tgttgaaatatgccttgaattagtgttgggaaaatgtctcacatcggataatatgaagaaatatgcaaagacttggatatataaataaaagtct |
37965560 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 10128458 - 10128551
Alignment:
| Q |
113 |
tgttgaaatatgccttgaatttgcgttgggaaaatgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaaagtct |
206 |
Q |
| |
|
|||||||||||| | |||||| | ||||| ||||| | ||||||| || ||||| |||||||||| ||| | |||||||||||||||||||||| |
|
|
| T |
10128458 |
tgttgaaatatgtcctgaattagtgttggaaaaatattccacatcggagaatatgaagaaatatggaaagacttggtcatataaataaaagtct |
10128551 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 15140779 - 15140858
Alignment:
| Q |
127 |
ttgaatttgcgttgggaaaatgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaaagtct |
206 |
Q |
| |
|
||||||| | ||||||| |||||||||||| | ||| || |||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
15140779 |
ttgaattagtgttgggattatgtcccacatcggttaaaatgaagaaatatgtaaagatttggtcatataaataaaagtct |
15140858 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 15140725 - 15140779
Alignment:
| Q |
113 |
tgttgaaatatgccttgaatttgcgttgggaaaatgtcccacatcagataatatt |
167 |
Q |
| |
|
|||||||||||| |||||||| | ||||| |||||||||||||||| |||||||| |
|
|
| T |
15140725 |
tgttgaaatatgtcttgaattagtgttggaaaaatgtcccacatcaaataatatt |
15140779 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 53469825 - 53469732
Alignment:
| Q |
113 |
tgttgaaatatgccttgaatttgcgttgggaaaatgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaaagtct |
206 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||| | |||||||||||||| |||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
53469825 |
tgttgaaatatgcctttaattaatgttgggaaaatgttctacatcagataatatgaagaaatatgcaaagacttggtcatataaataaaagtct |
53469732 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 204
Target Start/End: Complemental strand, 53472710 - 53472622
Alignment:
| Q |
115 |
ttgaaatatgccttgaatttgcgttgggaaaatgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaaagt |
204 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||| ||||||| ||||||| |||||||||||||| | || | ||||||||||||||| |
|
|
| T |
53472710 |
ttgaaatatgccttgaattagtgttgggaaaatgttccacatcggataatacgaagaaatatgcaaagactt-gccatataaataaaagt |
53472622 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 9010980 - 9010892
Alignment:
| Q |
112 |
gtgttgaaatatgccttgaatttgcgttgggaaaatgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataa |
200 |
Q |
| |
|
|||||||||||||||| ||||| | ||| |||| |||||||||||| ||| |||| ||||||||||| | | |||| ||||||||||| |
|
|
| T |
9010980 |
gtgttgaaatatgcctggaattagtgttaggaatatgtcccacatcggatgatatgaagaaatatgctatgacttggccatataaataa |
9010892 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 206
Target Start/End: Original strand, 27272574 - 27272621
Alignment:
| Q |
159 |
gataatattaagaaatatgcaaatatttggtcatataaataaaagtct |
206 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27272574 |
gataatatgaagaaatatgcaaaggtttggtcatataaataaaagtct |
27272621 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 29235291 - 29235206
Alignment:
| Q |
115 |
ttgaaatatgccttgaatttgcgttgggaaaatgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaa |
201 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| ||||||||| ||| |||| || ||||||||||| | |||| |||||||||||| |
|
|
| T |
29235291 |
ttgaaatattccttgaattat-gttgggaaaatatcccacatcggattatatgaaaaaatatgcaaagacttggccatataaataaa |
29235206 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 13816904 - 13816988
Alignment:
| Q |
117 |
gaaatatgccttgaatttgcgttgggaaaatgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaa |
201 |
Q |
| |
|
||||||||| ||||||| |||||||||| ||| |||||| | ||||| ||||||||||| || | ||||||||||||||||| |
|
|
| T |
13816904 |
gaaatatgcattgaattaatgttgggaaaaagtctcacatcgaagaatatgaagaaatatgcgaagacttggtcatataaataaa |
13816988 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 113 - 201
Target Start/End: Original strand, 24284780 - 24284868
Alignment:
| Q |
113 |
tgttgaaatatgccttgaatttgcgttgggaaaatgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaa |
201 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||||| ||||| || |||||||||||||||||| ||||||||||| |
|
|
| T |
24284780 |
tgttgaaatatgccttgaattaatattgggaaaaagtcccacatcagagaatatgaacaaatatgcaaatatttggctatataaataaa |
24284868 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 22827166 - 22827109
Alignment:
| Q |
146 |
atgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaaag |
203 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
22827166 |
atgtcccacatcggataatatgaagaaatatgcaaaggtttggtcatataaataaaag |
22827109 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 22840959 - 22841016
Alignment:
| Q |
146 |
atgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaaag |
203 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||| ||||||||| ||||||||| |
|
|
| T |
22840959 |
atgtcccacatcggataatatgaagaaatatgcaaaggcttggtcataaaaataaaag |
22841016 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 203
Target Start/End: Original strand, 14721664 - 14721755
Alignment:
| Q |
111 |
tgtgttgaaatatgccttgaatttgcgttgggaaaatgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaaag |
203 |
Q |
| |
|
|||||||| ||||||| |||||| ||||||||||||||||||||| || |||| |||||||||||||| |||||| | |||||||||||| |
|
|
| T |
14721664 |
tgtgttgacatatgccatgaattaatgttgggaaaatgtcccacatcggagaatagaaagaaatatgcaaagatttgg-cctataaataaaag |
14721755 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 13558114 - 13558057
Alignment:
| Q |
146 |
atgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaaag |
203 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
13558114 |
atgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaag |
13558057 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 27340743 - 27340686
Alignment:
| Q |
145 |
aatgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaaa |
202 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
27340743 |
aatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaa |
27340686 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 27401483 - 27401426
Alignment:
| Q |
145 |
aatgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaaa |
202 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
27401483 |
aatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatataaataaaa |
27401426 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 11678826 - 11678886
Alignment:
| Q |
142 |
gaaaatgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaaa |
202 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||| |||||||| ||||||||| |
|
|
| T |
11678826 |
gaaaatgtcccacatcggataatatgaagaaatatgcaaaggcttggtcatgtaaataaaa |
11678886 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 2921981 - 2921921
Alignment:
| Q |
146 |
atgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaaagtct |
206 |
Q |
| |
|
||||| |||||| |||||||| ||||||||||||| | ||||| |||||||||||||||| |
|
|
| T |
2921981 |
atgtctcacatcggataatatgaagaaatatgcaatgacttggtaatataaataaaagtct |
2921921 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 22880141 - 22880053
Alignment:
| Q |
113 |
tgttgaaatatgccttgaatttgcgttgggaaaatgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaa |
201 |
Q |
| |
|
||||||||| | ||||||||| | ||||| |||| ||| |||| |||| |||| ||||||||| ||||| ||||||||||||||||| |
|
|
| T |
22880141 |
tgttgaaatttaccttgaattagtgttggaaaaaagtcacacaacagagaatagaaagaaatatataaatacttggtcatataaataaa |
22880053 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 201
Target Start/End: Complemental strand, 22898256 - 22898168
Alignment:
| Q |
113 |
tgttgaaatatgccttgaatttgcgttgggaaaatgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaa |
201 |
Q |
| |
|
||||||||| | ||||||||| | ||||| |||| ||| |||| |||| |||| ||||||||| ||||| ||||||||||||||||| |
|
|
| T |
22898256 |
tgttgaaatttaccttgaattagtgttggaaaaaagtcacacaacagagaatagaaagaaatatataaatacttggtcatataaataaa |
22898168 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 2923295 - 2923237
Alignment:
| Q |
149 |
tcccacatcagataatattaagaaatatgcaaatat-ttggtcatataaataaaagtct |
206 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2923295 |
tcccacatcggataatatgaagaaatatgcaaaaggcttggtcatataaataaaagtct |
2923237 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 16403513 - 16403573
Alignment:
| Q |
145 |
aatgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaaagtct |
206 |
Q |
| |
|
|||| |||||||||| |||||| ||||||||||| || | || ||||||||||||||||||| |
|
|
| T |
16403513 |
aatgccccacatcaggtaatatgaagaaatatgc-aagacttagtcatataaataaaagtct |
16403573 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 32795673 - 32795609
Alignment:
| Q |
142 |
gaaaatgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaaagtct |
206 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||| | || ||||||| ||||||||||| |
|
|
| T |
32795673 |
gaaaatgtcccacatcggataatatgaagaaatatgcaaagacttagtcatattaataaaagtct |
32795609 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 19670656 - 19670717
Alignment:
| Q |
142 |
gaaaatgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaaag |
203 |
Q |
| |
|
||||||||| ||||| ||||||||| |||||||||||||| || |||||||||||||||| |
|
|
| T |
19670656 |
gaaaatgtctcacataagataatatgaagaaatatgcaaaggcttagtcatataaataaaag |
19670717 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 32796437 - 32796376
Alignment:
| Q |
142 |
gaaaatgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaaag |
203 |
Q |
| |
|
|||||||||||| ||| |||||||| |||||||||||||| || |||||||||||||||| |
|
|
| T |
32796437 |
gaaaatgtcccagatcggataatatgaagaaatatgcaaaggcttagtcatataaataaaag |
32796376 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 7961767 - 7961824
Alignment:
| Q |
146 |
atgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaaag |
203 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
7961767 |
atgtcccacatcgcataatatgaagaaatatgcaaaggtttggtcatataaataaaag |
7961824 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 11269943 - 11270004
Alignment:
| Q |
142 |
gaaaatgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaaag |
203 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||| ||| |||||||||||||||||||| |
|
|
| T |
11269943 |
gaaaatgtcccacatcggataatatgaagaaatataaaaaagtttggtcatataaataaaag |
11270004 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 1103129 - 1103205
Alignment:
| Q |
127 |
ttgaatttgcgttgggaaaatgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaaag |
203 |
Q |
| |
|
||||||| | ||||| |||| |||||||||| |||||||| |||||||||| ||| | |||| |||||||||||||| |
|
|
| T |
1103129 |
ttgaattagtgttggaaaaacgtcccacatcggataatatgaagaaatatgtaaagacttggccatataaataaaag |
1103205 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 1103078 - 1103129
Alignment:
| Q |
116 |
tgaaatatgccttgaatttgcgttgggaaaatgtcccacatcagataatatt |
167 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| |||||| ||||||||| |
|
|
| T |
1103078 |
tgaaatatgccttgaattagtgttgggaaaatgtctcacatctgataatatt |
1103129 |
T |
 |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 25889610 - 25889674
Alignment:
| Q |
142 |
gaaaatgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaaagtct |
206 |
Q |
| |
|
|||||||||||||||| ||||| || |||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
25889610 |
gaaaatgtcccacatcggataacatgaagagttatgcaaaggtttggtcatataaataaaagtct |
25889674 |
T |
 |
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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 30046375 - 30046467
Alignment:
| Q |
113 |
tgttgaaatatgccttgaatttgcgttgggaaaatgtcccacatcagataatat--taagaaatatgcaaatatttggtcatataaataaaag |
203 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| || ||| |||||||| || ||||||||||| | ||| |||||||||||||| |
|
|
| T |
30046375 |
tgttgaaatatgccttgaattaatgttgggaaaatgtctcatatcggataatatgaaaaaaaatatgcaaagacttgaccatataaataaaag |
30046467 |
T |
 |
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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 31141391 - 31141454
Alignment:
| Q |
143 |
aaaatgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaaagtct |
206 |
Q |
| |
|
|||| ||| ||||||||| |||| |||||||||||||| |||| | ||||||||||||||||| |
|
|
| T |
31141391 |
aaaaagtctcacatcagagaataggaagaaatatgcaaagatttagccatataaataaaagtct |
31141454 |
T |
 |
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Target: scaffold0065 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 34681 - 34745
Alignment:
| Q |
142 |
gaaaatgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaaagtct |
206 |
Q |
| |
|
||||||||| ||||| ||||||||| || ||||||| |||| || ||||||||||||||||||| |
|
|
| T |
34681 |
gaaaatgtctcacattagataatataaaaaaatatgaaaatgcttagtcatataaataaaagtct |
34745 |
T |
 |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 206
Target Start/End: Original strand, 33897182 - 33897260
Alignment:
| Q |
128 |
tgaatttgcgttgggaaaatgtcccacatcagataatattaagaaatatgcaaatatttggtcatataaataaaagtct |
206 |
Q |
| |
|
|||||| | ||||||||||||||| | |||| |||||| |||||||||| ||| ||||| |||||||||||||||| |
|
|
| T |
33897182 |
tgaattagtgttgggaaaatgtccaatatcatataataggaagaaatatgtaaagatttgacaatataaataaaagtct |
33897260 |
T |
 |
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