View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19587_low_6 (Length: 461)

Name: NF19587_low_6
Description: NF19587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19587_low_6
NF19587_low_6
[»] chr6 (63 HSPs)
chr6 (16-461)||(31284384-31284829)
chr6 (42-458)||(26623075-26623514)
chr6 (42-458)||(26729053-26729492)
chr6 (310-461)||(27592960-27593111)
chr6 (310-461)||(27610942-27611093)
chr6 (310-461)||(27718319-27718470)
chr6 (310-461)||(27724785-27724936)
chr6 (228-458)||(28786377-28786607)
chr6 (228-458)||(28792498-28792728)
chr6 (310-458)||(27679045-27679193)
chr6 (228-458)||(28781238-28781468)
chr6 (228-458)||(26861715-26861942)
chr6 (310-458)||(27677554-27677702)
chr6 (310-458)||(27706342-27706490)
chr6 (277-458)||(26884262-26884445)
chr6 (310-458)||(27698434-27698582)
chr6 (321-458)||(27604656-27604793)
chr6 (318-458)||(26802541-26802681)
chr6 (228-458)||(28242903-28243133)
chr6 (229-458)||(28227049-28227278)
chr6 (367-458)||(26646578-26646669)
chr6 (367-458)||(26752546-26752637)
chr6 (318-456)||(27427554-27427692)
chr6 (301-459)||(28098300-28098458)
chr6 (306-458)||(26949760-26949912)
chr6 (372-458)||(26823939-26824025)
chr6 (315-461)||(26848756-26848902)
chr6 (229-458)||(28181213-28181442)
chr6 (301-458)||(25481841-25481998)
chr6 (234-458)||(27214516-27214743)
chr6 (234-458)||(27234485-27234712)
chr6 (228-458)||(28234663-28234892)
chr6 (135-211)||(26623636-26623712)
chr6 (135-211)||(26729613-26729689)
chr6 (427-461)||(26341991-26342025)
chr6 (228-458)||(28185465-28185695)
chr6 (228-458)||(28297571-28297801)
chr6 (228-458)||(28514272-28514502)
chr6 (425-458)||(25579818-25579851)
chr6 (425-458)||(26048944-26048977)
chr6 (425-458)||(26056025-26056058)
chr6 (425-458)||(26070113-26070146)
chr6 (425-458)||(26075995-26076028)
chr6 (425-458)||(26142964-26142997)
chr6 (427-458)||(26656088-26656119)
chr6 (427-458)||(26762059-26762090)
chr6 (427-458)||(26975151-26975182)
chr6 (228-458)||(27337923-27338153)
chr6 (228-458)||(27398663-27398893)
chr6 (428-458)||(2184387-2184417)
chr6 (355-461)||(26811605-26811711)
chr6 (228-290)||(26937373-26937435)
chr6 (228-290)||(28325744-28325806)
chr6 (425-458)||(25071758-25071791)
chr6 (425-458)||(25538639-25538672)
chr6 (425-458)||(28150036-28150069)
chr6 (238-274)||(25580002-25580038)
chr6 (238-274)||(26056209-26056245)
chr6 (238-274)||(26076179-26076215)
chr6 (427-459)||(26635788-26635820)
chr6 (427-459)||(26741754-26741786)
chr6 (228-280)||(28098215-28098267)
chr6 (429-461)||(28139637-28139669)
[»] scaffold0277 (2 HSPs)
scaffold0277 (228-461)||(4529-4762)
scaffold0277 (228-458)||(13490-13720)
[»] chr1 (3 HSPs)
chr1 (185-458)||(28127481-28127754)
chr1 (228-458)||(28164208-28164437)
chr1 (367-458)||(268341-268432)
[»] scaffold0349 (2 HSPs)
scaffold0349 (310-461)||(14296-14447)
scaffold0349 (310-458)||(3361-3509)
[»] scaffold0419 (1 HSPs)
scaffold0419 (228-458)||(7624-7854)
[»] scaffold0038 (4 HSPs)
scaffold0038 (228-458)||(43065-43295)
scaffold0038 (229-458)||(27547-27776)
scaffold0038 (228-458)||(34824-35054)
scaffold0038 (228-290)||(117059-117121)
[»] scaffold0003 (1 HSPs)
scaffold0003 (318-456)||(59671-59809)
[»] chr4 (8 HSPs)
chr4 (318-456)||(18073863-18074001)
chr4 (367-458)||(18655461-18655552)
chr4 (367-458)||(18679551-18679642)
chr4 (367-458)||(18699384-18699475)
chr4 (372-458)||(18731493-18731579)
chr4 (316-461)||(5090900-5091045)
chr4 (372-458)||(18724074-18724160)
chr4 (228-292)||(5090806-5090870)
[»] chr8 (1 HSPs)
chr8 (367-458)||(29273767-29273858)
[»] scaffold0019 (1 HSPs)
scaffold0019 (228-458)||(58140-58370)
[»] chr2 (2 HSPs)
chr2 (228-284)||(3279976-3280032)
chr2 (427-458)||(3279787-3279818)


Alignment Details
Target: chr6 (Bit Score: 413; Significance: 0; HSPs: 63)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 16 - 461
Target Start/End: Complemental strand, 31284829 - 31284384
Alignment:
Q  16 ataagttggtgaacaaatnnnnnnncaatcacatctatatcttgacgaatatatcatacaattctaattgttttgacatacaataactagtatttgttta 115  Q
    ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31284829 ataagttggtgaacaaataaaaaaacaatcacatctatatcttgacgaatatatcatacaattctaattgttttgacatacaataactaatatttgttta 31284730  T
Q  116 aatatataaataaaaaatgtttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaaggcaaaacaagattgaagtgaagtaggcta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31284729 aatatataaataaaaaatgtttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaaggcaaaacaagattgaagtgaagaaggcta 31284630  T
Q  216 cccaggagaacgatggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284629 cccaggagaacgatggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctc 31284530  T
Q  316 tcttcatgcttagccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccatttt 415  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31284529 tcttcatgcttagccaatgcttctccataactacctctatgatgtcgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccatttt 31284430  T
Q  416 gcttatacaagtgaatgatgtggacaagttcgtccaaacaaaacga 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31284429 gcttatacaagtgaatgatgtggacaagttcgtccaaacaaaacga 31284384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 42 - 458
Target Start/End: Complemental strand, 26623514 - 26623075
Alignment:
Q  42 aatcacatctatatcttgacgaatatatcatacaattctaattgttttgacatacaa-taactagtatttgtttaaatatataaataaaaaat---gttt 137  Q
    |||||||| |||||||| || | ||| |||||||||||||| |||||||| |||||| || ||| |||||||||||||||||||| |||||||   ||||    
T  26623514 aatcacatttatatcttaacaattatgtcatacaattctaaatgttttgatatacaaatacctaatatttgtttaaatatataaacaaaaaattgtgttt 26623415  T
Q  138 cccttttaagcatttatatggaatgattgaggaataaaaattgaagaa----------------ggcaaaacaagattgaagtgaagtaggctacccagg 221  Q
    |||||||||||||| |||||||||||||| ||||||| ||||||||||                ||||||||||||||||||||||||||||||||||||    
T  26623414 cccttttaagcattaatatggaatgattggggaataagaattgaagaaataaagcatatatgaaggcaaaacaagattgaagtgaagtaggctacccagg 26623315  T
Q  222 agaacgatggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgtt---ggaacctctct 318  Q
    |  ||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| || ||||||||  |   ||||||||| |    
T  26623314 atgacgatggtctccagacaagttagctgcttgtgcaagagctatcttccatttttgcaacctctccatattatatgtattattattatggaacctcttt 26623215  T
Q  319 tcatgcttagccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgct 418  Q
     |||||||||| | |||||| |||||||| ||  | ||||| || |  |||| ||||||||||||| |||| |||||||||||||| ||||| |||   |    
T  26623214 gcatgcttagcaagtgcttcgccataactcccagtttgatgccgtatgtgagtaggatccacgccatagaagacgggcaaaacgagacgaccctttgttt 26623115  T
Q  419 tatacaagtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    | ||  |||||||||||||||||||||| |||||||||||    
T  26623114 tgtagcagtgaatgatgtggacaagttcatccaaacaaaa 26623075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 42 - 458
Target Start/End: Complemental strand, 26729492 - 26729053
Alignment:
Q  42 aatcacatctatatcttgacgaatatatcatacaattctaattgttttgacatacaa-taactagtatttgtttaaatatataaataaaaaat---gttt 137  Q
    |||||||| |||||||| || | ||| |||||||||||||| |||||||| |||||| || ||| |||||||||||||||||||| |||||||   ||||    
T  26729492 aatcacatttatatcttaacaattatgtcatacaattctaaatgttttgatatacaaatacctaatatttgtttaaatatataaacaaaaaattgtgttt 26729393  T
Q  138 cccttttaagcatttatatggaatgattgaggaataaaaattgaagaa----------------ggcaaaacaagattgaagtgaagtaggctacccagg 221  Q
    |||||||||||||| |||||||||||||| ||||||| ||||||||||                ||||||||||||||||||||||||||||||||||||    
T  26729392 cccttttaagcattaatatggaatgattggggaataagaattgaagaaataaagcatatatgaaggcaaaacaagattgaagtgaagtaggctacccagg 26729293  T
Q  222 agaacgatggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgtt---ggaacctctct 318  Q
    |  ||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| || ||||||||  |   ||||||||| |    
T  26729292 atgacgatggtctccagacaagttagctgcttgtgcaagagctatcttccatttttgcaacctctccatattatatgtattattattatggaacctcttt 26729193  T
Q  319 tcatgcttagccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgct 418  Q
     |||||||||| | |||||| |||||||| ||  | ||||| || |  |||| ||||||||||||| |||| |||||||||||||| ||||| |||   |    
T  26729192 gcatgcttagcaagtgcttcgccataactcccagtttgatgccgtatgtgagtaggatccacgccatagaagacgggcaaaacgagacgaccctttgttt 26729093  T
Q  419 tatacaagtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    | ||  |||||||||||||||||||||| |||||||||||    
T  26729092 tgtagcagtgaatgatgtggacaagttcatccaaacaaaa 26729053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 310 - 461
Target Start/End: Original strand, 27592960 - 27593111
Alignment:
Q  310 aacctctcttcatgcttagccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgac 409  Q
    ||||||| |||||||| |||||||||||| |||||||||||| ||||||| |||||||||||||||||||| ||||||||||| ||||||||  ||||||    
T  27592960 aacctcttttcatgctcagccaatgcttcaccataactacctttatgatgtcgcacatgagaaggatccacaccaaagaaaacaggcaaaacagggcgac 27593059  T
Q  410 cattttgcttatacaagtgaatgatgtggacaagttcgtccaaacaaaacga 461  Q
    | |||  ||| ||  | |||||||||||| ||||||||||||||||||||||    
T  27593060 cctttgtcttgtagcaatgaatgatgtggtcaagttcgtccaaacaaaacga 27593111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 310 - 461
Target Start/End: Original strand, 27610942 - 27611093
Alignment:
Q  310 aacctctcttcatgcttagccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgac 409  Q
    ||||||| |||||||| |||||||||||| |||||||||||| | ||||| ||||| | || ||| |||||||| |||||||| ||||||||||||||||    
T  27610942 aacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcactttagtaggttccacgccgaagaaaacaggcaaaacgaggcgac 27611041  T
Q  410 cattttgcttatacaagtgaatgatgtggacaagttcgtccaaacaaaacga 461  Q
    | |||  ||| ||  ||||||| |||||||||||||||||||||||||||||    
T  27611042 cctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacga 27611093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 310 - 461
Target Start/End: Original strand, 27718319 - 27718470
Alignment:
Q  310 aacctctcttcatgcttagccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgac 409  Q
    ||||||| |||||||| |||||||||||| |||||||||||| | ||||| ||||| | || ||| |||||||| |||||||| ||||||||||||||||    
T  27718319 aacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcacgttagtaggttccacgccgaagaaaacaggcaaaacgaggcgac 27718418  T
Q  410 cattttgcttatacaagtgaatgatgtggacaagttcgtccaaacaaaacga 461  Q
    | |||  ||| ||  ||||||| |||||||||||||||||||||||||||||    
T  27718419 cctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacga 27718470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 310 - 461
Target Start/End: Original strand, 27724785 - 27724936
Alignment:
Q  310 aacctctcttcatgcttagccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgac 409  Q
    ||||||| |||||||| |||||||||||| |||||||||||| | ||||| ||||| | || ||| |||||||| |||||||| ||||||||||||||||    
T  27724785 aacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcacgttagtaggttccacgccgaagaaaacaggcaaaacgaggcgac 27724884  T
Q  410 cattttgcttatacaagtgaatgatgtggacaagttcgtccaaacaaaacga 461  Q
    | |||  ||| ||  ||||||| |||||||||||||||||||||||||||||    
T  27724885 cctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacga 27724936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 228 - 458
Target Start/End: Complemental strand, 28786607 - 28786377
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| ||| ||||||||||| ||||| || ||||| | ||||||||  |||||||| ||||| | |||  ||| || ||| ||||||| |||||||  |    
T  28786607 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttttcatgccca 28786508  T
Q  328 gccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagt 427  Q
    ||||||||||| ||||||| |||| ||||||| ||||||| || |||||| || ||||||||||| ||||||||||||||||| |||  ||| ||  | |    
T  28786507 gccaatgcttcaccataacgacctgtatgatgtcgcacattagtaggatcgacaccaaagaaaacaggcaaaacgaggcgaccttttgtcttgtagcaat 28786408  T
Q  428 gaatgatgtggacaagttcgtccaaacaaaa 458  Q
    |||| ||||| |||||||||||||| |||||    
T  28786407 gaataatgtgaacaagttcgtccaagcaaaa 28786377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 228 - 458
Target Start/End: Complemental strand, 28792728 - 28792498
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| ||| ||||||||||| ||||| || ||||| | ||||||||  |||||||| ||||| | |||  ||| || ||| ||||||| |||||||  |    
T  28792728 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttttcatgccca 28792629  T
Q  328 gccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagt 427  Q
    ||||||||||| ||||||| |||| ||||||| ||||||| || |||||| || ||||||||||| ||||||||||||||||| |||  ||| ||  | |    
T  28792628 gccaatgcttcaccataacgacctgtatgatgtcgcacattagtaggatcgacaccaaagaaaacaggcaaaacgaggcgaccttttgtcttgtagcaat 28792529  T
Q  428 gaatgatgtggacaagttcgtccaaacaaaa 458  Q
    |||| ||||| |||||||||||||| |||||    
T  28792528 gaataatgtgaacaagttcgtccaagcaaaa 28792498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 310 - 458
Target Start/End: Complemental strand, 27679193 - 27679045
Alignment:
Q  310 aacctctcttcatgcttagccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgac 409  Q
    ||||||| |||||||| |||||||||||| |||||||||||| || |||| ||||||  || ||| ||||| ||||||||||| |||| |||||||||||    
T  27679193 aacctcttttcatgctcagccaatgcttcaccataactacctttacgatgtcgcacaacagtaggttccacaccaaagaaaacaggcagaacgaggcgac 27679094  T
Q  410 cattttgcttatacaagtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    | |||  ||| ||  ||||||||||||||||||||||||||||||||||    
T  27679093 cctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaa 27679045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 228 - 458
Target Start/End: Complemental strand, 28781468 - 28781238
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| ||| ||||||||||| ||||| || ||||| | ||||||||  |||||||| ||||| | |||  ||| || ||| ||||||| ||||||   |    
T  28781468 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatccttatcattttgaaacctcttttcatgtcca 28781369  T
Q  328 gccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagt 427  Q
    ||||||||||| ||||||  |||| ||||||| ||||||| || ||||||||| ||||||||||| ||||||||||||||||| |||  ||| ||  | |    
T  28781368 gccaatgcttcaccataaggacctgtatgatgtcgcacattagtaggatccacaccaaagaaaacaggcaaaacgaggcgaccttttgtcttgtagcaat 28781269  T
Q  428 gaatgatgtggacaagttcgtccaaacaaaa 458  Q
    |||| ||||| |||||||||||||| |||||    
T  28781268 gaataatgtgaacaagttcgtccaagcaaaa 28781238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 228 - 458
Target Start/End: Complemental strand, 26861942 - 26861715
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| ||| ||||||||||| |||||  | ||||| |  |||||| | |||||||| ||||| | |||  ||| || ||| ||||| | ||||||||||    
T  26861942 atggtagcctgacaagttagcagcttggttcagagcaactttccatctctgcaacctctccatgttatccatatcattttgaaaccttttttcatgctta 26861843  T
Q  328 gccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagt 427  Q
    ||||||||||| |||||| ||||||||||||| ||||||| || |||||||| |||| ||||||| |||||||||| |||||| |||| |||     |||    
T  26861842 gccaatgcttcaccataaatacctctatgatgtcgcacattagtaggatccatgccatagaaaacaggcaaaacgacgcgacccttttcctt---gcagt 26861746  T
Q  428 gaatgatgtggacaagttcgtccaaacaaaa 458  Q
     |||||| ||||||||||| |||||||||||    
T  26861745 taatgatttggacaagttcatccaaacaaaa 26861715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 310 - 458
Target Start/End: Original strand, 27677554 - 27677702
Alignment:
Q  310 aacctctcttcatgcttagccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgac 409  Q
    ||||||| |||||||| |||||||||||| |||||||||||| | ||||| ||||||  || ||| |||||  |||||||||| |||| |||||||||||    
T  27677554 aacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcacaatagtaggttccacagcaaagaaaacaggcagaacgaggcgac 27677653  T
Q  410 cattttgcttatacaagtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    | |||  ||| ||  ||||||||||||||||||||||||||||||||||    
T  27677654 cctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaa 27677702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 310 - 458
Target Start/End: Original strand, 27706342 - 27706490
Alignment:
Q  310 aacctctcttcatgcttagccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgac 409  Q
    ||||||| |||||||| |||||||||||| |||||||||||| || |||| ||||||  || ||| || || ||||| ||||| |||| |||||||||||    
T  27706342 aacctcttttcatgctcagccaatgcttcaccataactacctttacgatgtcgcacaatagtaggttctacaccaaataaaacaggcagaacgaggcgac 27706441  T
Q  410 cattttgcttatacaagtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    | |||  ||| ||  ||||||||||||||||||||||||||||||||||    
T  27706442 cctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaa 27706490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 277 - 458
Target Start/End: Complemental strand, 26884445 - 26884262
Alignment:
Q  277 tgcaacctttccatatgatctgtattatgttggaacctctcttcatgcttagccaatgcttctccataactacctctatgatgacgcacatgagaaggat 376  Q
    |||||||| ||||| | |||  ||| || ||| ||||| | |||||| | |||||||||||| |||||||||||| ||||||| ||||||| || |||||    
T  26884445 tgcaacctctccatgttatccttatcattttgaaaccttttttcatggtcagccaatgcttcaccataactacctgtatgatgtcgcacatcagtaggat 26884346  T
Q  377 ccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagtgaatg--atgtggacaagttcgtccaaacaaaa 458  Q
    |||| ||||  ||||| ||||||||||||||||| |||  ||  ||  ||||||||  ||||||||||||||||||||||||||    
T  26884345 ccacaccaacaaaaacaggcaaaacgaggcgaccctttgtctcgtagcagtgaatgacatgtggacaagttcgtccaaacaaaa 26884262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 310 - 458
Target Start/End: Original strand, 27698434 - 27698582
Alignment:
Q  310 aacctctcttcatgcttagccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgac 409  Q
    ||||||| |||||||| |||||||||||  |||||||||||| ||||||| | ||||| ||  || ||||| || |||||||| ||||||||||||||||    
T  27698434 aacctcttttcatgctcagccaatgctttgccataactacctttatgatgtctcacattagttggttccacaccgaagaaaacaggcaaaacgaggcgac 27698533  T
Q  410 cattttgcttatacaagtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    | |||  ||  ||  ||||||| ||||||||||||||||||||||||||    
T  27698534 cctttgtctcgtagcagtgaattatgtggacaagttcgtccaaacaaaa 27698582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 321 - 458
Target Start/End: Original strand, 27604656 - 27604793
Alignment:
Q  321 atgcttagccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgctta 420  Q
    ||||| |||||||||||  || ||||||||| ||||||| |||||||||||||| ||||| ||||||||||| |||||||||| |||||| |||  | |     
T  27604656 atgctcagccaatgcttgaccgtaactacctttatgatgtcgcacatgagaaggttccacaccaaagaaaacaggcaaaacgacgcgaccctttgtcgtg 27604755  T
Q  421 tacaagtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    ||  | ||||||||||| |||||||| |||||||||||    
T  27604756 tagcaatgaatgatgtgaacaagttcatccaaacaaaa 27604793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 318 - 458
Target Start/End: Complemental strand, 26802681 - 26802541
Alignment:
Q  318 ttcatgcttagccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgc 417  Q
    |||||||| |||||||||||| ||||| |||| | ||||||| ||||||| || ||||||||| ||||||||||  ||||| ||||||||||| |||  |    
T  26802681 ttcatgctcagccaatgcttcaccatagctacatgtatgatggcgcacattagtaggatccacaccaaagaaaataggcaagacgaggcgaccctttgtc 26802582  T
Q  418 ttatacaagtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    |||||  | ||||| ||||| |||||||||||||| |||||    
T  26802581 ttatagcaatgaataatgtgaacaagttcgtccaagcaaaa 26802541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 458
Target Start/End: Complemental strand, 28243133 - 28242903
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| |||||| |||||||||| |||||| |||||  |||||||||| |||||||| ||||| | ||| ||  ||| ||||||| ||||   ||||| |    
T  28243133 atggtggccagagaagttagctgtttgagttagagcactcttccatttctgcaacctctccatgttatccgtgctattttggaacttctcaatatgctca 28243034  T
Q  328 gccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagt 427  Q
    |||| |||||  |||||||| ||  | ||||| | ||| | |||||| |||||  || ||||||  |||||||| ||||| ||||||| |||  |  |||    
T  28243033 gccagtgctttaccataactgccaatctgatgtctcacgttagaaggttccacatcatagaaaattggcaaaactaggcgtccatttttcttgcagcagt 28242934  T
Q  428 gaatgatgtggacaagttcgtccaaacaaaa 458  Q
    ||||||||||||||||||||||||| |||||    
T  28242933 gaatgatgtggacaagttcgtccaagcaaaa 28242903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 229 - 458
Target Start/End: Complemental strand, 28227278 - 28227049
Alignment:
Q  229 tggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgcttag 328  Q
    |||| |||||| |||||||| | |||||||||||| ||||||||||| |||||||| |||||   ||   | |||| |||||||||||||  ||| | |     
T  28227278 tggtggccagagaagttagcagtttgagtaagagccatcttccatttctgcaacctatccatgctatgcttgttattttggaacctctctatatgatcat 28227179  T
Q  329 ccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagtg 428  Q
    ||| |||||  |||||||| ||  | ||||| |||||||||||||| |||||  || ||||||  |||||||| ||||| | ||||| |||  |  | ||    
T  28227178 ccagtgctttaccataactgcccttgtgatgtcgcacatgagaaggttccacatcatagaaaattggcaaaacaaggcgccgattttccttgaagcaatg 28227079  T
Q  429 aatgatgtggacaagttcgtccaaacaaaa 458  Q
    |||||||||||||||||||||||| |||||    
T  28227078 aatgatgtggacaagttcgtccaagcaaaa 28227049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 367 - 458
Target Start/End: Complemental strand, 26646669 - 26646578
Alignment:
Q  367 tgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||| |||  ||| ||  | ||||||||||||||||||||||||||||||||    
T  26646669 tgagtaggatccacgccatagaaaacgggcaaaacgagacgaccctttgtcttgtagcaatgaatgatgtggacaagttcgtccaaacaaaa 26646578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 367 - 458
Target Start/End: Complemental strand, 26752637 - 26752546
Alignment:
Q  367 tgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||| |||  ||| ||  | ||||||||||||||||||||||||||||||||    
T  26752637 tgagtaggatccacgccatagaaaacgggcaaaacgagacgaccctttgtcttgtagcaatgaatgatgtggacaagttcgtccaaacaaaa 26752546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 318 - 456
Target Start/End: Original strand, 27427554 - 27427692
Alignment:
Q  318 ttcatgcttagccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgc 417  Q
    |||||||| |||||||||||  ||||| |||||| ||||||| ||||||| || ||| ||||| ||||||||||| ||||||||||||| ||| ||        
T  27427554 ttcatgctcagccaatgctttaccatacctacctgtatgatgtcgcacatcagtaggttccacaccaaagaaaacaggcaaaacgaggcaacccttggtt 27427653  T
Q  418 ttatacaagtgaatgatgtggacaagttcgtccaaacaa 456  Q
    || ||  ||||||||||||||||||||  ||||||||||    
T  27427654 ttgtagcagtgaatgatgtggacaagtgtgtccaaacaa 27427692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 301 - 459
Target Start/End: Original strand, 28098300 - 28098458
Alignment:
Q  301 ttatgttggaacctctcttcatgcttagccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaa 400  Q
    |||| |||||||||||||||||||||||| |||||||| |||||||| ||  | ||||| ||||| |||||||| |||||| || | ||||  || ||||    
T  28098300 ttattttggaacctctcttcatgcttagctaatgcttcaccataactccccgtctgatgtcgcacgtgagaaggttccacgtcacaaaaaataggaaaaa 28098399  T
Q  401 cgaggcgaccattttgcttatacaagtgaatgatgtggacaagttcgtccaaacaaaac 459  Q
    ||| || ||| ||||  |  ||   ||||||||||||||||||||| ||||||||||||    
T  28098400 cgaagcaacccttttcttcgtaacggtgaatgatgtggacaagttcatccaaacaaaac 28098458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 306 - 458
Target Start/End: Complemental strand, 26949912 - 26949760
Alignment:
Q  306 ttggaacctctcttcatgcttagccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgagg 405  Q
    |||||||||||||||||||||||| | |||||| |||||||||    | ||||| ||||| |||||||| || ||  || ||||||| |||| ||| |||    
T  26949912 ttggaacctctcttcatgcttagcaagtgcttcaccataactataattctgatgtcgcacgtgagaaggttctacatcatagaaaactggcagaacaagg 26949813  T
Q  406 cgaccattttgcttatacaagtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    ||||| |||| |||  |  |||||||||| |||||||||||||| ||||||||    
T  26949812 cgacctttttccttgaagtagtgaatgatatggacaagttcgtctaaacaaaa 26949760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 372 - 458
Target Start/End: Complemental strand, 26824025 - 26823939
Alignment:
Q  372 aggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    ||||||||| ||| ||||||| |||||||||||||| || |||| ||| || | | |||||||||||||||||||||||||||||||    
T  26824025 aggatccacaccatagaaaacaggcaaaacgaggcgccccttttccttgtagacgcgaatgatgtggacaagttcgtccaaacaaaa 26823939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 461
Target Start/End: Complemental strand, 26848902 - 26848756
Alignment:
Q  315 ctcttcatgcttagccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattt 414  Q
    ||||||||||||||| | |||||| ||||||||||   | ||||| |||||||||||||| || | |||| ||||||| || | ||| | || ||| |||    
T  26848902 ctcttcatgcttagcaagtgcttcaccataactactattctgatgtcgcacatgagaaggttctatgccatagaaaacaggaataaccatgctacccttt 26848803  T
Q  415 tgcttatacaagtgaatgatgtggacaagttcgtccaaacaaaacga 461  Q
    | |||  |  | |||||||||||||||||||||||||||||||||||    
T  26848802 tccttggagcaatgaatgatgtggacaagttcgtccaaacaaaacga 26848756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 229 - 458
Target Start/End: Complemental strand, 28181442 - 28181213
Alignment:
Q  229 tggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgcttag 328  Q
    |||| |||||| |||||||| | |||||||||||| ||||||||||| |||||||| |||||   ||   | |||| |||||||||||||  ||| | |     
T  28181442 tggtggccagagaagttagcagtttgagtaagagcaatcttccatttctgcaacctatccatgctatgcttgttattttggaacctctctatatgatcat 28181343  T
Q  329 ccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagtg 428  Q
    ||| |||||  |||||||| ||  | ||||| ||||| |||||||| |||||  || ||||||  |||||||| || || ||  ||| |||  |  ||||    
T  28181342 ccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactagacgcccgctttccttgaagcagtg 28181243  T
Q  429 aatgatgtggacaagttcgtccaaacaaaa 458  Q
    |||||||||||||||||||||||| |||||    
T  28181242 aatgatgtggacaagttcgtccaagcaaaa 28181213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 301 - 458
Target Start/End: Complemental strand, 25481998 - 25481841
Alignment:
Q  301 ttatgttggaacctctcttcatgcttagccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaa 400  Q
    |||| |||||||| |||||||||||||| ||    ||| |||||||||| | ||||| | || |||| || ||||||||| ||| |||||||||| || |    
T  25481998 ttattttggaacccctcttcatgcttagtcagatattcaccataactacatgtatgacgtcgaacatcagtaggatccacaccatagaaaacgggtaata 25481899  T
Q  401 cgaggcgaccattttgcttatacaagtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    | | || ||  |||  ||| ||  ||||||||||||||||||||||||||||||||||    
T  25481898 ctaagcaactctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaa 25481841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 458
Target Start/End: Complemental strand, 27214743 - 27214516
Alignment:
Q  234 gccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgcttagccaat 333  Q
    |||||| |||||||| |||||  ||||||||||||||||||| |||||||  ||||| |  ||  | |||| ||| |||||||||||||||||||| |      
T  27214743 gccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgcttagcaagc 27214644  T
Q  334 gcttctccataactacctctat---gatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagtgaa 430  Q
    ||||| ||||||||     | |   |||| ||||  |||||||| || |||||| ||||||| || | ||| |||||||| |||| |||  |  | |||     
T  27214643 gcttcaccataactgttgttgttcagatgtcgcaagtgagaaggttcaacgccatagaaaacaggtagaacaaggcgacctttttccttggagcaatgag 27214544  T
Q  431 tgatgtggacaagttcgtccaaacaaaa 458  Q
    ||||||||||||||||||||||||||||    
T  27214543 tgatgtggacaagttcgtccaaacaaaa 27214516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 458
Target Start/End: Original strand, 27234485 - 27234712
Alignment:
Q  234 gccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgcttagccaat 333  Q
    |||||| |||||||| |||||  ||||||||||||||||||| |||||||  ||||| |  ||  | |||| ||| |||||||||||||||||||| |      
T  27234485 gccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttgaaacctctcttcatgcttagcaagc 27234584  T
Q  334 gcttctccataactacctctat---gatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagtgaa 430  Q
    ||||| ||||||||     | |   |||| ||||  |||||||| || |||||| ||||||| || | ||| |||||||| |||| |||  |  | |||     
T  27234585 gcttcaccataactgttgttgttcagatgtcgcaagtgagaaggttcaacgccatagaaaacaggtagaacaaggcgacctttttccttggagcaatgag 27234684  T
Q  431 tgatgtggacaagttcgtccaaacaaaa 458  Q
    ||||||||||||||||||||||||||||    
T  27234685 tgatgtggacaagttcgtccaaacaaaa 27234712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 228 - 458
Target Start/End: Complemental strand, 28234892 - 28234663
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| |||||| ||||||| || |||||||||||| ||||||||||| |||||||| ||||| | |||  | |||| ||||||| ||| |  ||| | |    
T  28234892 atggtggccagaaaagttagatgtttgagtaagagccatcttccatttctgcaacctctccatgttatccttgttattttggaacttctttatatgatca 28234793  T
Q  328 gccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagt 427  Q
     ||| |||||  |||||||| ||  | ||||| ||||| |||||||| |||||  || ||||||  |||||||| ||||| | ||||| ||   |  | |    
T  28234792 tccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactaggcgtctattttcctcgaagca-t 28234694  T
Q  428 gaatgatgtggacaagttcgtccaaacaaaa 458  Q
     |||||||||||||||||||||||| |||||    
T  28234693 aaatgatgtggacaagttcgtccaagcaaaa 28234663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 26623712 - 26623636
Alignment:
Q  135 tttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaaggcaaaacaagattgaagtgaagtag 211  Q
    |||||| ||||||| || | || |||||||| ||||||| ||| | ||||||||||||||||||| |||||||||||    
T  26623712 tttcccatttaagctttaagattgaatgatttaggaatataaaataaagaaggcaaaacaagattcaagtgaagtag 26623636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 26729689 - 26729613
Alignment:
Q  135 tttcccttttaagcatttatatggaatgattgaggaataaaaattgaagaaggcaaaacaagattgaagtgaagtag 211  Q
    |||||| ||||||| || | || |||||||| ||||||| ||| | ||||||||||||||||||| |||||||||||    
T  26729689 tttcccatttaagctttaagattgaatgatttaggaatataaaataaagaaggcaaaacaagattcaagtgaagtag 26729613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 461
Target Start/End: Original strand, 26341991 - 26342025
Alignment:
Q  427 tgaatgatgtggacaagttcgtccaaacaaaacga 461  Q
    |||||||||||||||||||||||||||||||||||    
T  26341991 tgaatgatgtggacaagttcgtccaaacaaaacga 26342025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 458
Target Start/End: Complemental strand, 28185695 - 28185465
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| |||||| |||||||| | ||||||||||||  |||||||||| |||||||| |||||   |||  | |||| ||||||| ||| |  ||| | |    
T  28185695 atggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgctatccttgttattttggaacttctttatatgatca 28185596  T
Q  328 gccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagt 427  Q
     ||| |||||  |||||||| ||  | ||||| ||||| |||||||| |||||  || ||||||  |||||||| || || ||  ||| |||  |  |||    
T  28185595 tccagtgctttaccataactgcccgtgtgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactagacgcccgctttccttgaagcagt 28185496  T
Q  428 gaatgatgtggacaagttcgtccaaacaaaa 458  Q
     |||||||||||||||||||||||| |||||    
T  28185495 taatgatgtggacaagttcgtccaagcaaaa 28185465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 458
Target Start/End: Original strand, 28297571 - 28297801
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| |||||| |||||||| | ||||||||||||  |||||||||| |||||||| ||||| | ||   | |||| ||||||| |||||  ||| | |    
T  28297571 atggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgttattcttgttattttggaacttctctatatgatca 28297670  T
Q  328 gccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagt 427  Q
     ||| |||||   ||||||| ||    ||||| |||||||||||||| |||||  || | ||||  |||||||| || || | | ||| |||  |  |||    
T  28297671 tccagtgctttagcataacttccatgttgatgtcgcacatgagaaggttccacatcataaaaaatcggcaaaactagacggctactttccttgaagcagt 28297770  T
Q  428 gaatgatgtggacaagttcgtccaaacaaaa 458  Q
    ||||||||||||||||||||||||| |||||    
T  28297771 gaatgatgtggacaagttcgtccaagcaaaa 28297801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 458
Target Start/End: Complemental strand, 28514502 - 28514272
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| |||||| |||||||| | ||||||||||||  |||||||||| |||||||| ||||| | ||   | |||| ||||||| |||||  ||| | |    
T  28514502 atggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgttattcttgttattttggaacttctctatatgatca 28514403  T
Q  328 gccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagt 427  Q
     ||| |||||   ||||||| ||    ||||| |||||||||||||| |||||  || | ||||  |||||||| || || | | ||| |||  |  |||    
T  28514402 tccagtgctttagcataacttccatgttgatgtcgcacatgagaaggttccacatcataaaaaatcggcaaaactagacggctactttccttgaagcagt 28514303  T
Q  428 gaatgatgtggacaagttcgtccaaacaaaa 458  Q
    ||||||||||||||||||||||||| |||||    
T  28514302 gaatgatgtggacaagttcgtccaagcaaaa 28514272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 425 - 458
Target Start/End: Complemental strand, 25579851 - 25579818
Alignment:
Q  425 agtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    ||||||||||||||||||||||||||||||||||    
T  25579851 agtgaatgatgtggacaagttcgtccaaacaaaa 25579818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 425 - 458
Target Start/End: Complemental strand, 26048977 - 26048944
Alignment:
Q  425 agtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    ||||||||||||||||||||||||||||||||||    
T  26048977 agtgaatgatgtggacaagttcgtccaaacaaaa 26048944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 425 - 458
Target Start/End: Complemental strand, 26056058 - 26056025
Alignment:
Q  425 agtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    ||||||||||||||||||||||||||||||||||    
T  26056058 agtgaatgatgtggacaagttcgtccaaacaaaa 26056025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 425 - 458
Target Start/End: Complemental strand, 26070146 - 26070113
Alignment:
Q  425 agtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    ||||||||||||||||||||||||||||||||||    
T  26070146 agtgaatgatgtggacaagttcgtccaaacaaaa 26070113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 425 - 458
Target Start/End: Complemental strand, 26076028 - 26075995
Alignment:
Q  425 agtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    ||||||||||||||||||||||||||||||||||    
T  26076028 agtgaatgatgtggacaagttcgtccaaacaaaa 26075995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 425 - 458
Target Start/End: Complemental strand, 26142997 - 26142964
Alignment:
Q  425 agtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    ||||||||||||||||||||||||||||||||||    
T  26142997 agtgaatgatgtggacaagttcgtccaaacaaaa 26142964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 458
Target Start/End: Complemental strand, 26656119 - 26656088
Alignment:
Q  427 tgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    ||||||||||||||||||||||||||||||||    
T  26656119 tgaatgatgtggacaagttcgtccaaacaaaa 26656088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 458
Target Start/End: Complemental strand, 26762090 - 26762059
Alignment:
Q  427 tgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    ||||||||||||||||||||||||||||||||    
T  26762090 tgaatgatgtggacaagttcgtccaaacaaaa 26762059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 458
Target Start/End: Complemental strand, 26975182 - 26975151
Alignment:
Q  427 tgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    ||||||||||||||||||||||||||||||||    
T  26975182 tgaatgatgtggacaagttcgtccaaacaaaa 26975151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 458
Target Start/End: Original strand, 27337923 - 27338153
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| ||| || |||||||| ||||| |||||||| ||||||||||| | |||||| ||||| |  ||  | |||| ||||||| | ||||||||||||    
T  27337923 atggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgctta 27338022  T
Q  328 gcca-atgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaag 426  Q
    |  | ||||| | |||||||| ||  | ||||| || || |||| ||||||| | ||| ||||||| ||||||||    | |||  ||  ||| ||  ||    
T  27338023 gtaagatgct-caccataactcccagtctgatgtcgtacgtgagtaggatccgcaccatagaaaacaggcaaaaccgaacaaccccttgtcttgtagcag 27338121  T
Q  427 tgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    |||||||||||||||||||||||||| |||||    
T  27338122 tgaatgatgtggacaagttcgtccaagcaaaa 27338153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 458
Target Start/End: Original strand, 27398663 - 27398893
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| ||| || |||||||| ||||| |||||||| ||||||||||| | |||||| ||||| |  ||  | |||| ||||||| | ||||||||||||    
T  27398663 atggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttcatgctta 27398762  T
Q  328 gcca-atgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaag 426  Q
    |  | ||||| | |||||||| ||  | ||||| || || |||| ||||||| | ||| ||||||| ||||||||    | |||  ||  ||| ||  ||    
T  27398763 gtaagatgct-caccataactcccagtctgatgtcgtacgtgagtaggatccgcaccatagaaaacaggcaaaaccgaacaaccccttgtcttgtagcag 27398861  T
Q  427 tgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    |||||||||||||||||||||||||| |||||    
T  27398862 tgaatgatgtggacaagttcgtccaagcaaaa 27398893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 428 - 458
Target Start/End: Complemental strand, 2184417 - 2184387
Alignment:
Q  428 gaatgatgtggacaagttcgtccaaacaaaa 458  Q
    |||||||||||||||||||||||||||||||    
T  2184417 gaatgatgtggacaagttcgtccaaacaaaa 2184387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 461
Target Start/End: Complemental strand, 26811711 - 26811605
Alignment:
Q  355 tgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagtgaatgatgtggacaagttcgtccaaac 454  Q
    ||||| ||||| |||||||| ||||| ||| ||||||| || | ||| |||||||| |||| |||  |  ||| ||||||||||||||| || || ||||    
T  26811711 tgatgtcgcacgtgagaaggttccacaccatagaaaactggtagaacaaggcgacctttttccttgaagtagttaatgatgtggacaagctcatctaaac 26811612  T
Q  455 aaaacga 461  Q
    |||||||    
T  26811611 aaaacga 26811605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 26937435 - 26937373
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 290  Q
    ||||| |||||||||||| || |||||  |||||||||||||||||||  ||||||| |||||    
T  26937435 atggtggccagacaagtttgccgcttggttaagagctatcttccatttccgcaacctctccat 26937373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 28325806 - 28325744
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 290  Q
    ||||| ||| || |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  28325806 atggtggcctgagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 28325744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 458
Target Start/End: Complemental strand, 25071791 - 25071758
Alignment:
Q  425 agtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    ||||||||||||||||||||||||| ||||||||    
T  25071791 agtgaatgatgtggacaagttcgtctaaacaaaa 25071758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 458
Target Start/End: Complemental strand, 25538672 - 25538639
Alignment:
Q  425 agtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    |||||||||| |||||||||||||||||||||||    
T  25538672 agtgaatgatctggacaagttcgtccaaacaaaa 25538639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 458
Target Start/End: Complemental strand, 28150069 - 28150036
Alignment:
Q  425 agtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    ||||||| ||||||||||||||||||||||||||    
T  28150069 agtgaataatgtggacaagttcgtccaaacaaaa 28150036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 25580038 - 25580002
Alignment:
Q  238 gacaagttagctgcttgagtaagagctatcttccatt 274  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  25580038 gacaagttagcagcttgggtaagagctatcttccatt 25580002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 26056245 - 26056209
Alignment:
Q  238 gacaagttagctgcttgagtaagagctatcttccatt 274  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  26056245 gacaagttagcagcttgagtaagagccatcttccatt 26056209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 274
Target Start/End: Complemental strand, 26076215 - 26076179
Alignment:
Q  238 gacaagttagctgcttgagtaagagctatcttccatt 274  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  26076215 gacaagttagcagcttgagtaagagccatcttccatt 26076179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 427 - 459
Target Start/End: Complemental strand, 26635820 - 26635788
Alignment:
Q  427 tgaatgatgtggacaagttcgtccaaacaaaac 459  Q
    |||||||||||||||||||| ||||||||||||    
T  26635820 tgaatgatgtggacaagttcatccaaacaaaac 26635788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 427 - 459
Target Start/End: Complemental strand, 26741786 - 26741754
Alignment:
Q  427 tgaatgatgtggacaagttcgtccaaacaaaac 459  Q
    |||||||||||||||||||| ||||||||||||    
T  26741786 tgaatgatgtggacaagttcatccaaacaaaac 26741754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 28098215 - 28098267
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgca 280  Q
    ||||| ||| |||||||||||||||||  ||||||| ||||||||||| ||||    
T  28098215 atggtggccggacaagttagctgcttggttaagagccatcttccatttatgca 28098267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 429 - 461
Target Start/End: Complemental strand, 28139669 - 28139637
Alignment:
Q  429 aatgatgtggacaagttcgtccaaacaaaacga 461  Q
    |||||||||||||||||||||||| ||||||||    
T  28139669 aatgatgtggacaagttcgtccaagcaaaacga 28139637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 228 - 461
Target Start/End: Original strand, 4529 - 4762
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| ||| ||||||||||| ||||| || ||||| | ||||||||  |||||||| ||||| | ||   ||| || ||| ||||||| |||||||| |    
T  4529 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttattcttatcattttgaaacctcttttcatgctca 4628  T
Q  328 gccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagt 427  Q
    ||||||||||| |||||||||||| |  |||| ||||| | || ||| |||||||| |||||||| ||||||||||||||||| |||  ||| ||  |||    
T  4629 gccaatgcttcaccataactacctttcagatgtcgcacgttagtaggttccacgccgaagaaaacaggcaaaacgaggcgaccctttgtcttgtagcagt 4728  T
Q  428 gaatgatgtggacaagttcgtccaaacaaaacga 461  Q
    |||| |||||||||||||||||||||||||||||    
T  4729 gaattatgtggacaagttcgtccaaacaaaacga 4762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 228 - 458
Target Start/End: Original strand, 13490 - 13720
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| ||| ||||||||||| ||||| || ||||| | ||||||||  ||||| |  ||||| | ||   ||| || ||| ||||||| ||||||   |    
T  13490 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaacctcttttcatgtcca 13589  T
Q  328 gccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagt 427  Q
    ||||||||||| ||||||| |||| ||||||| ||||||| || ||||||||| ||||||||||| ||||||||||||||||| |||  ||| ||  | |    
T  13590 gccaatgcttcaccataacgacctgtatgatgtcgcacattagtaggatccacaccaaagaaaacaggcaaaacgaggcgaccttttgtcttgtagcaat 13689  T
Q  428 gaatgatgtggacaagttcgtccaaacaaaa 458  Q
    |||| ||||| |||||||||||||| |||||    
T  13690 gaataatgtgaacaagttcgtccaagcaaaa 13720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 185 - 458
Target Start/End: Original strand, 28127481 - 28127754
Alignment:
Q  185 aggcaaaacaagattgaagtgaagtaggctacccaggagaacgatggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacct 284  Q
    ||||||||||||||| ||||  |||||| ||||| |||  |  ||||| ||| ||||||||||| ||||| || ||||||||||||||||  ||||| |     
T  28127481 aggcaaaacaagatttaagtatagtagggtaccctggactataatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcg 28127580  T
Q  285 ttccatatgatctgtattatgttggaacctctcttcatgcttagccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgcca 384  Q
     ||||| |  |   | |||| ||||||||||||| |||||||||| |   |||| |||||||| ||| ||||||  ||||||| || |||||||||||||    
T  28127581 ctccatgtttttcttgttattttggaacctctctccatgcttagcaagctcttcaccataactccctgtatgatatcgcacatcagtaggatccacgcca 28127680  T
Q  385 aagaaaacgggcaaaacgaggcgaccattttgcttatacaagtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    |||||||| |||||||| |||||||| |||  ||| ||  ||||||||||||| ||||||||||||||||||||    
T  28127681 aagaaaacaggcaaaactaggcgaccctttgtcttgtagcagtgaatgatgtgcacaagttcgtccaaacaaaa 28127754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 228 - 458
Target Start/End: Original strand, 28164208 - 28164437
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| ||| ||||||||||| ||||| || ||||||||||||||||  ||||| |  ||||| |  |   | |||| ||||||||||||  ||||||||    
T  28164208 atggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaacctctcaccatgctta 28164307  T
Q  328 gccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagt 427  Q
    |  |   |||  |||||||| ||| ||||||| ||||||| || |||||||||||||| |||||| |||||||| |||||||| |||  ||| ||  |||    
T  28164308 gtaagatctttgccataactccctgtatgatgtcgcacatcagtaggatccacgccaa-gaaaacaggcaaaactaggcgaccctttgtcttgtagcagt 28164406  T
Q  428 gaatgatgtggacaagttcgtccaaacaaaa 458  Q
    |||||||||||||||||||||||||||||||    
T  28164407 gaatgatgtggacaagttcgtccaaacaaaa 28164437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 367 - 458
Target Start/End: Original strand, 268341 - 268432
Alignment:
Q  367 tgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    |||| ||||||||||||| |||| |||||||||| ||| ||||| |||| ||| ||  ||||||||||||||||||||||||||||||||||    
T  268341 tgagtaggatccacgccatagaagacgggcaaaatgagacgaccctttttcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaa 268432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 310 - 461
Target Start/End: Original strand, 14296 - 14447
Alignment:
Q  310 aacctctcttcatgcttagccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgac 409  Q
    ||||||| |||||||| |||||||||||| |||||||||||| | ||||| ||||| | || ||| |||||||| |||||||| ||||||||||||||||    
T  14296 aacctcttttcatgctcagccaatgcttcaccataactacctttctgatgtcgcacgttagtaggttccacgccgaagaaaacaggcaaaacgaggcgac 14395  T
Q  410 cattttgcttatacaagtgaatgatgtggacaagttcgtccaaacaaaacga 461  Q
    | |||  ||| ||  ||||||| |||||||||||||||||||||||||||||    
T  14396 cctttgtcttgtagcagtgaattatgtggacaagttcgtccaaacaaaacga 14447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 310 - 458
Target Start/End: Original strand, 3361 - 3509
Alignment:
Q  310 aacctctcttcatgcttagccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgac 409  Q
    ||||||| |||||||| |||||||||||| |||||||||||| || |||| ||||||  || ||| ||||| ||||| ||||| |||| |||||||||||    
T  3361 aacctcttttcatgctcagccaatgcttcaccataactacctttacgatgtcgcacaatagtaggttccacaccaaataaaacaggcagaacgaggcgac 3460  T
Q  410 cattttgcttatacaagtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    | |||  ||| ||  ||||||||||||||||||||||||||||||||||    
T  3461 cctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaa 3509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 228 - 458
Target Start/End: Complemental strand, 7854 - 7624
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| ||| ||||||||||| ||||| || ||||| | ||||||||  ||||| |  ||||| | ||   ||| || ||| ||||||| ||||||   |    
T  7854 atggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttattcttatcattttgaaacctcttttcatgtcca 7755  T
Q  328 gccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagt 427  Q
    ||||||||||| ||||||| |||| ||||||| ||||||| || ||||||||| ||||||||||| ||||||||||||||||| | |  ||| ||  | |    
T  7754 gccaatgcttcaccataacgacctgtatgatgtcgcacattagtaggatccacaccaaagaaaacaggcaaaacgaggcgaccttctgtcttgtagcaat 7655  T
Q  428 gaatgatgtggacaagttcgtccaaacaaaa 458  Q
    |||| ||||| |||||||||||||| |||||    
T  7654 gaataatgtgaacaagttcgtccaagcaaaa 7624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 458
Target Start/End: Complemental strand, 43295 - 43065
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| |||||| |||||||||| |||||| |||||  |||||||||| |||||||| ||||| | ||| ||  ||| ||||||| ||||   ||||| |    
T  43295 atggtggccagagaagttagctgtttgagttagagcactcttccatttctgcaacctctccatgttatccgtgctattttggaacttctcaatatgctca 43196  T
Q  328 gccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagt 427  Q
    |||| |||||  |||||||| ||  | ||||| | ||| | |||||| |||||  || ||||||  |||||||| ||||| ||||||| |||  |  |||    
T  43195 gccagtgctttaccataactgccaatctgatgtctcacgttagaaggttccacatcatagaaaattggcaaaactaggcgtccatttttcttgcagcagt 43096  T
Q  428 gaatgatgtggacaagttcgtccaaacaaaa 458  Q
    ||||||||||||||||||||||||| |||||    
T  43095 gaatgatgtggacaagttcgtccaagcaaaa 43065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 229 - 458
Target Start/End: Complemental strand, 27776 - 27547
Alignment:
Q  229 tggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgcttag 328  Q
    |||| |||||| |||||||| | |||||||||||| ||||||||||| |||||||| |||||   ||   | |||| |||||||||||||  ||| | |     
T  27776 tggtggccagagaagttagcagtttgagtaagagcaatcttccatttctgcaacctatccatgctatgcttgttattttggaacctctctatatgatcat 27677  T
Q  329 ccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagtg 428  Q
    ||| |||||  |||||||| ||  | ||||| |||||||||||||| |||||  || ||||||  |||||||| ||||| | ||||| |||  |  | ||    
T  27676 ccagtgctttaccataactgcccttgtgatgtcgcacatgagaaggttccacatcatagaaaattggcaaaacaaggcgccgattttccttgaagcaatg 27577  T
Q  429 aatgatgtggacaagttcgtccaaacaaaa 458  Q
    |||||||||||||||||||||||| |||||    
T  27576 aatgatgtggacaagttcgtccaagcaaaa 27547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 228 - 458
Target Start/End: Complemental strand, 35054 - 34824
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| |||||| ||||||| || |||||||||||| ||||||||||| |||||||| ||||| | |||  | |||| ||||||| ||| |  ||| | |    
T  35054 atggtggccagaaaagttagatgtttgagtaagagccatcttccatttctgcaacctctccatgttatccttgttattttggaacttctttatatgatca 34955  T
Q  328 gccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagt 427  Q
     ||| |||||  |||||||| ||  | ||||| ||||| |||||||| |||||  || ||||||  |||||||| || || ||  ||| |||  |  |||    
T  34954 tccagtgctttaccataactgcccttgtgatgtcgcacgtgagaaggttccacatcatagaaaattggcaaaactagacgcccgctttccttgaagcagt 34855  T
Q  428 gaatgatgtggacaagttcgtccaaacaaaa 458  Q
    ||||||||||||||||||||||||| |||||    
T  34854 gaatgatgtggacaagttcgtccaagcaaaa 34824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 290
Target Start/End: Complemental strand, 117121 - 117059
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccat 290  Q
    ||||| ||| || |||||||| | |||||||||||| ||||||||||| |||||||| |||||    
T  117121 atggtggcctgagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccat 117059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 318 - 456
Target Start/End: Complemental strand, 59809 - 59671
Alignment:
Q  318 ttcatgcttagccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgc 417  Q
    |||||||| |||||||||||  ||||| |||||| ||||||| ||||||| || ||| ||||| ||||||||||| ||||||||||||| ||| ||        
T  59809 ttcatgctcagccaatgctttaccatacctacctgtatgatgtcgcacatcagtaggttccacaccaaagaaaacaggcaaaacgaggcaacccttggtt 59710  T
Q  418 ttatacaagtgaatgatgtggacaagttcgtccaaacaa 456  Q
    || ||  ||||||||||||||||||||  ||||||||||    
T  59709 ttgtagcagtgaatgatgtggacaagtgtgtccaaacaa 59671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 318 - 456
Target Start/End: Complemental strand, 18074001 - 18073863
Alignment:
Q  318 ttcatgcttagccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgc 417  Q
    |||||||| |||||||||||  ||||| |||||| ||||||| ||||||| || ||| ||||| ||||||||||| ||||||||||||| ||| ||        
T  18074001 ttcatgctcagccaatgctttaccatacctacctgtatgatgtcgcacatcagtaggttccacaccaaagaaaacaggcaaaacgaggcaacccttggtt 18073902  T
Q  418 ttatacaagtgaatgatgtggacaagttcgtccaaacaa 456  Q
    || ||  ||||||||||||||||||||  ||||||||||    
T  18073901 ttgtagcagtgaatgatgtggacaagtgtgtccaaacaa 18073863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 367 - 458
Target Start/End: Original strand, 18655461 - 18655552
Alignment:
Q  367 tgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    |||| ||||||||||||| ||||||| || |||||||| ||||| |||  ||| ||  ||||||||||| ||||||||||||||||||||||    
T  18655461 tgagtaggatccacgccatagaaaacaggaaaaacgagacgaccctttgtcttgtagcagtgaatgatgcggacaagttcgtccaaacaaaa 18655552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 367 - 458
Target Start/End: Original strand, 18679551 - 18679642
Alignment:
Q  367 tgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    |||| |||||||||| || ||||||| |||||||| || ||||| |||  ||| ||  ||||||||||||||||||||||||||||||||||    
T  18679551 tgagtaggatccacgacatagaaaacaggcaaaacaagacgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaa 18679642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 367 - 458
Target Start/End: Original strand, 18699384 - 18699475
Alignment:
Q  367 tgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    |||| |||||| |||||| ||||||| ||||||||||| ||||| |||  ||| ||  ||||||||||||| ||||||||||||||||||||    
T  18699384 tgagtaggatctacgccatagaaaacaggcaaaacgagacgaccttttgtcttgtagcagtgaatgatgtgaacaagttcgtccaaacaaaa 18699475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 372 - 458
Target Start/End: Original strand, 18731493 - 18731579
Alignment:
Q  372 aggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    ||||||||||||| ||||||| |||||||| || ||||| |||  ||| ||  |||| |||||||||||||||||||||||||||||    
T  18731493 aggatccacgccatagaaaacaggcaaaacaagacgaccctttgtcttgtagcagtgcatgatgtggacaagttcgtccaaacaaaa 18731579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 461
Target Start/End: Original strand, 5090900 - 5091045
Alignment:
Q  316 tcttcatgcttagccaatgcttctccataactacctctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccatttt 415  Q
    |||||||||| ||| | |||||| |||||||| ||  | ||||  |||||||||||||| ||||| ||| ||||||  |||||||| |||| ||||||||    
T  5090900 tcttcatgctcagcaagtgcttcaccataacttccagtctgatatcgcacatgagaaggttccacaccatagaaaataggcaaaaccaggcaaccatttt 5090999  T
Q  416 gcttatacaagtgaatgatgtggacaagttcgtccaaacaaaacga 461  Q
     |||  |  ||||||| || ||||||||||| || |||||||||||    
T  5091000 ccttggagcagtgaataatatggacaagttcatctaaacaaaacga 5091045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 372 - 458
Target Start/End: Original strand, 18724074 - 18724160
Alignment:
Q  372 aggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    ||||||||||||| ||||||| |||||||| || ||||| |||  ||| ||  |||| ||||||||||||||||||| |||||||||    
T  18724074 aggatccacgccatagaaaacaggcaaaacaagacgaccctttgtcttgtagcagtgcatgatgtggacaagttcgttcaaacaaaa 18724160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 292
Target Start/End: Original strand, 5090806 - 5090870
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatat 292  Q
    ||||| ||||||||| |||||||||||  ||||||| |||| |||||| |||||| | |||||||    
T  5090806 atggtagccagacaaattagctgcttgcttaagagccatctcccatttctgcaacttctccatat 5090870  T

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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 367 - 458
Target Start/End: Original strand, 29273767 - 29273858
Alignment:
Q  367 tgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaagtgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    |||| ||||||||||||| |||| || ||||||| ||| ||||| |||  ||| ||  ||||||||||||||||||||||||||||||||||    
T  29273767 tgagtaggatccacgccatagaagacaggcaaaatgagacgaccctttgtcttgtagcagtgaatgatgtggacaagttcgtccaaacaaaa 29273858  T

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Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 458
Target Start/End: Original strand, 58140 - 58370
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacctttccatatgatctgtattatgttggaacctctcttcatgctta 327  Q
    ||||| |||||| |||||||| |  |||||||||||| |||||||||| |||||||| || ||   |||  |  ||| ||||||||||||   |||||      
T  58140 atggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacctctctatgctatccttgctattttggaacctctcaatatgctcg 58239  T
Q  328 gccaatgcttctccataactacc-tctatgatgacgcacatgagaaggatccacgccaaagaaaacgggcaaaacgaggcgaccattttgcttatacaag 426  Q
    || | |||||  |||||||| || ||| ||||| ||||| |||||||| |||||| || ||||||  |||||||| ||||| |||| || ||   |  ||    
T  58240 gcaagtgctttaccataacttccatct-tgatgtcgcacgtgagaaggttccacgtcatagaaaattggcaaaactaggcgcccatattcctcgaagcag 58338  T
Q  427 tgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    |||||||||||||||||||||| ||| |||||    
T  58339 tgaatgatgtggacaagttcgttcaagcaaaa 58370  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 3280032 - 3279976
Alignment:
Q  228 atggtcgccagacaagttagctgcttgagtaagagctatcttccatttttgcaacct 284  Q
    ||||| ||| |||||||||||||||||  ||||||| ||||||||||| ||||||||    
T  3280032 atggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacct 3279976  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 458
Target Start/End: Complemental strand, 3279818 - 3279787
Alignment:
Q  427 tgaatgatgtggacaagttcgtccaaacaaaa 458  Q
    ||||||||||||||||||||||||||||||||    
T  3279818 tgaatgatgtggacaagttcgtccaaacaaaa 3279787  T

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