View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19587_low_8 (Length: 450)

Name: NF19587_low_8
Description: NF19587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19587_low_8
NF19587_low_8
[»] chr3 (10 HSPs)
chr3 (13-274)||(5578100-5578361)
chr3 (325-433)||(5578357-5578464)
chr3 (64-130)||(32077480-32077546)
chr3 (64-130)||(51646885-51646951)
chr3 (79-130)||(4737800-4737851)
chr3 (64-130)||(46835541-46835607)
chr3 (206-263)||(5559694-5559750)
chr3 (92-129)||(8508672-8508709)
chr3 (64-114)||(8507228-8507279)
chr3 (206-263)||(5551145-5551200)
[»] chr4 (6 HSPs)
chr4 (337-420)||(23637807-23637889)
chr4 (337-420)||(36001425-36001507)
chr4 (64-123)||(47965540-47965599)
chr4 (87-144)||(14866628-14866686)
chr4 (89-130)||(30179071-30179112)
chr4 (79-116)||(52525953-52525990)
[»] chr1 (3 HSPs)
chr1 (337-419)||(1632115-1632197)
chr1 (64-139)||(20602208-20602284)
chr1 (79-130)||(29308696-29308747)
[»] chr8 (3 HSPs)
chr8 (79-130)||(14836399-14836450)
chr8 (79-130)||(27229237-27229288)
chr8 (79-130)||(30850214-30850265)
[»] chr6 (2 HSPs)
chr6 (79-130)||(29279776-29279827)
chr6 (79-131)||(9852102-9852154)
[»] chr2 (4 HSPs)
chr2 (79-130)||(28296914-28296965)
chr2 (79-130)||(24538237-24538288)
chr2 (79-123)||(22142305-22142349)
chr2 (96-130)||(7828944-7828978)
[»] chr7 (2 HSPs)
chr7 (79-140)||(27965240-27965304)
chr7 (79-123)||(45824591-45824635)
[»] scaffold0596 (1 HSPs)
scaffold0596 (79-126)||(1695-1742)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 5578100 - 5578361
Alignment:
Q  13 cacagatgcatctaactgccataacaacttttttggctccaaactgttctggccaaaaccatctacattagggttggcacaaattgttaacaatgttatt 112  Q
    |||| ||||||||||| |||| ||||  ||||||||||||||| |||||| ||||||||||||   ||||||||||||||||||||||||||||||||||    
T  5578100 cacaaatgcatctaacggccagaacagtttttttggctccaaattgttctagccaaaaccatcagaattagggttggcacaaattgttaacaatgttatt 5578199  T
Q  113 catattagaaataagtatatatgatatgatataactagattattcaaaagatcgacttatatctctctcctttataatagaagtttactttgtagaaaat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5578200 catattagaaataagtatatatgatatgatataactagattattcaaaagatcgacttatatctctctcctttataatagaagtttactttgtagaaaat 5578299  T
Q  213 gaaaaatacgcgtggcagatcattttgcttactatcatgaattgcttaaatagttggctttt 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5578300 gaaaaatacgcgtggcagatcattttgcttactatcatgaattgcttaaatagttggctttt 5578361  T

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Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 325 - 433
Target Start/End: Original strand, 5578357 - 5578464
Alignment:
Q  325 cttttcgtgaagttttctaatttattaattgtatatcactttgaaattagtagaaataaaatcctcacattaccatggatgcatcctttgagcacatcct 424  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||     
T  5578357 cttttcgttaagttttctaatttattaattgtatatcactttgaaattagtagaaataaaatcctcac-ttaccatggatgcatcctttgagcacatccc 5578455  T
Q  425 gttgtatat 433  Q
    |||||||||    
T  5578456 gttgtatat 5578464  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 32077480 - 32077546
Alignment:
Q  64 gccaaaaccatctacattagggttggcacaaattgttaacaatgttattcatattagaaataagtat 130  Q
    |||||||||||| | ||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  32077480 gccaaaaccatcaagattagggttggcataaattgttagcaatgttattcatattagaaataagtat 32077546  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 51646951 - 51646885
Alignment:
Q  64 gccaaaaccatctacattagggttggcacaaattgttaacaatgttattcatattagaaataagtat 130  Q
    ||||||| |||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  51646951 gccaaaaacatcaagattagggttgacacaaattgttaacaatgttattcatattagaaataagtat 51646885  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 4737800 - 4737851
Alignment:
Q  79 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 130  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  4737800 attagggttggcacaatttgttagcaatgttattcatattagaaataagtat 4737851  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 46835541 - 46835607
Alignment:
Q  64 gccaaaaccatctacattagggttggcacaaattgttaacaatgttattcatattagaaataagtat 130  Q
    |||||||||||| | |||||||||| ||||| ||||||| | |||||||||||||||||||||||||    
T  46835541 gccaaaaccatcaagattagggttgacacaatttgttaatattgttattcatattagaaataagtat 46835607  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 5559694 - 5559750
Alignment:
Q  206 agaaaatgaaaaatacgcgtggcagatcattttgcttactatcatgaattgcttaaat 263  Q
    |||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||    
T  5559694 agaaaatgaaaaatacgcgtggcaggacattt-gcttactatcatgaattgcttaaat 5559750  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 8508672 - 8508709
Alignment:
Q  92 caaattgttaacaatgttattcatattagaaataagta 129  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8508672 caaattgttaacaatgttattcatattagaaataagta 8508709  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 8507228 - 8507279
Alignment:
Q  64 gccaaaaccatctacatta-gggttggcacaaattgttaacaatgttattca 114  Q
    |||||||||||| | |||| |||||||||||||||||||||||| |||||||    
T  8507228 gccaaaaccatcaagattaagggttggcacaaattgttaacaatattattca 8507279  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 5551145 - 5551200
Alignment:
Q  206 agaaaatgaaaaatacgcgtggcagatcattttgcttactatcatgaattgcttaaat 263  Q
    ||||||||||| |||||||||| ||| ||||| ||||||||||||||||| |||||||    
T  5551145 agaaaatgaaatatacgcgtggtaga-cattt-gcttactatcatgaatttcttaaat 5551200  T

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Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 337 - 420
Target Start/End: Original strand, 23637807 - 23637889
Alignment:
Q  337 ttttctaatttattaattgtatatcactttgaaattagtagaaataaaatcctcacattaccatggatgcatcctttgagcaca 420  Q
    |||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  23637807 ttttctaatttattaattgtatatcg-tttgaaattagtagaaacaaaatcctcacattaccatggatgcatcatttgagcaca 23637889  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 337 - 420
Target Start/End: Original strand, 36001425 - 36001507
Alignment:
Q  337 ttttctaatttattaattgtatatcactttgaaattagtagaaataaaatcctcacattaccatggatgcatcctttgagcaca 420  Q
    |||||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  36001425 ttttctaatttattaattgtatatcg-tttgaaattagtagaaacaaaatcctcacattaccatggatgcatcatttgagcaca 36001507  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 47965540 - 47965599
Alignment:
Q  64 gccaaaaccatctacattagggttggcacaaattgttaacaatgttattcatattagaaa 123  Q
    ||||||||||||   ||||||||||||||||||||||| |||||||||||||||||||||    
T  47965540 gccaaaaccatcaggattagggttggcacaaattgttagcaatgttattcatattagaaa 47965599  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 14866628 - 14866686
Alignment:
Q  87 tggcacaaattgttaacaatgttattcatattagaaataagtat-atatgatatgatat 144  Q
    |||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  14866628 tggcacaatttgttaacattgttattcatattagaaataagtatgatatgatatgatat 14866686  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 30179071 - 30179112
Alignment:
Q  89 gcacaaattgttaacaatgttattcatattagaaataagtat 130  Q
    |||||| |||||| ||||||||||||||||||||||||||||    
T  30179071 gcacaatttgttagcaatgttattcatattagaaataagtat 30179112  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 52525953 - 52525990
Alignment:
Q  79 attagggttggcacaaattgttaacaatgttattcata 116  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  52525953 attagggttgacacaaattgttagcaatgttattcata 52525990  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 337 - 419
Target Start/End: Original strand, 1632115 - 1632197
Alignment:
Q  337 ttttctaatttattaattgtatatcactttgaaattagtagaaataaaatcctcacattaccatggatgcatcctttgagcac 419  Q
    |||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||| ||||| |  |||||||||    
T  1632115 ttttctaatttattaattgtatatcattttaaaattagtagaaacaaaatcctcacattaccattgatgcgtggtttgagcac 1632197  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 20602284 - 20602208
Alignment:
Q  64 gccaaaaccatctacattagggttggcacaaattgttaacaatgttattcatattagaaataagtat-atatgatat 139  Q
    |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||    
T  20602284 gccaaaaccatcaagatgagggttggcacaaattgttaacaatgttattcatattagaattaaatatgatatgatat 20602208  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 29308747 - 29308696
Alignment:
Q  79 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 130  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||||||||||    
T  29308747 attaaggttgacacaatttgttaacaatgttattcatattagaaataagtat 29308696  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 14836450 - 14836399
Alignment:
Q  79 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14836450 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 14836399  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 27229288 - 27229237
Alignment:
Q  79 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 130  Q
    |||||||||| | |||||| ||||||||| ||||||||||||||||||||||    
T  27229288 attagggttgacgcaaattattaacaatgctattcatattagaaataagtat 27229237  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 30850214 - 30850265
Alignment:
Q  79 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 130  Q
    |||||||||||||||| || ||| || |||||||||||||||||||||||||    
T  30850214 attagggttggcacaattttttagcagtgttattcatattagaaataagtat 30850265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 29279827 - 29279776
Alignment:
Q  79 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 130  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  29279827 attagggttggcacaatttgttaacaatgctattcatattagaaataagtat 29279776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 9852154 - 9852102
Alignment:
Q  79 attagggttggcacaaattgttaacaatgttattcatattagaaataagtata 131  Q
    |||||||||||||||| || ||| || ||||||||||||||||||||||||||    
T  9852154 attagggttggcacaattttttagcagtgttattcatattagaaataagtata 9852102  T

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Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 28296914 - 28296965
Alignment:
Q  79 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 130  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  28296914 attagggttggcacaatttgttaacaatgctattcatattagaaataagtat 28296965  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 24538288 - 24538237
Alignment:
Q  79 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 130  Q
    |||||||||| ||||| ||||||||| |||||||||||||||||||||||||    
T  24538288 attagggttgacacaatttgttaacattgttattcatattagaaataagtat 24538237  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 22142305 - 22142349
Alignment:
Q  79 attagggttggcacaaattgttaacaatgttattcatattagaaa 123  Q
    |||||||||||||||| |||||||||||| |||||||||||||||    
T  22142305 attagggttggcacaatttgttaacaatgctattcatattagaaa 22142349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 130
Target Start/End: Original strand, 7828944 - 7828978
Alignment:
Q  96 ttgttaacaatgttattcatattagaaataagtat 130  Q
    ||||||||| |||||||||||||||||||||||||    
T  7828944 ttgttaacattgttattcatattagaaataagtat 7828978  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 27965240 - 27965304
Alignment:
Q  79 attagggttggcacaaattgttaacaatgttatt--catattagaaataagtat-atatgatatg 140  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||||||||||    
T  27965240 attagggttggcacaaattgttaacaatgttatttatatattagaaataagtatgatatgatatg 27965304  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 45824635 - 45824591
Alignment:
Q  79 attagggttggcacaaattgttaacaatgttattcatattagaaa 123  Q
    ||||||||||||||||||||||| ||||| ||||  |||||||||    
T  45824635 attagggttggcacaaattgttagcaatgctattgctattagaaa 45824591  T

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Target: scaffold0596 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 1695 - 1742
Alignment:
Q  79 attagggttggcacaaattgttaacaatgttattcatattagaaataa 126  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||    
T  1695 attagggttggcacaaaatgttaacattgttattcatattagaaataa 1742  T

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