View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19587_low_9 (Length: 442)
Name: NF19587_low_9
Description: NF19587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19587_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 16 - 424
Target Start/End: Original strand, 8676097 - 8676505
Alignment:
| Q |
16 |
atgtttttcaatgatttgaacaccaattcagatttcaacacgaattattgctattaatgccagaatcattttttatcatgctcattaggagataaaaata |
115 |
Q |
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| T |
8676097 |
atgtttttgaatgatttgaacaccaattcagatttcaacacgaattattgctattaatgccagaatcattttttatcatgctcattaggagataaaaata |
8676196 |
T |
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| Q |
116 |
aatttctttgtataaatttctgattcacgcatcacaactatcataatttaaatgaaatacaatttttcgaggaggtttgaacttagtggaagagactaga |
215 |
Q |
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| T |
8676197 |
aatttctttgtatacatttctgattcacacatcacaactatcataatttaaatgaaatacaatttttcgaggaggtttgaacctagtggaagagactaga |
8676296 |
T |
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| Q |
216 |
tttgcacaatgtagcaaatttgaattccaaccgagagagatatatttacatttagtgtttgacacacctcaaatagtattacctcgggtggaagaaacct |
315 |
Q |
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| T |
8676297 |
tttgcccaatgtagcaaatttgaattccaactaagagagatatatttacatttagtgtttgacacacctcaaatagtattacctcgggtggaagaaacat |
8676396 |
T |
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| Q |
316 |
gtgggaaatcaaatttttgcaaaaccatctaaaacagttcataaattcgtattctttgcaaagtcaggcacaagttggttcgagtggagaggctagattc |
415 |
Q |
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| T |
8676397 |
gtgggaaatcaaatttttgcaaaaccatctaaaacagttcataaattcgtattctttgcaaagtcaggcacaagttggttcgagtggagaggctagactc |
8676496 |
T |
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| Q |
416 |
ccacgacat |
424 |
Q |
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| T |
8676497 |
ccacgacat |
8676505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 352 - 424
Target Start/End: Original strand, 8642620 - 8642692
Alignment:
| Q |
352 |
gttcataaattcgtattctttgcaaagtcaggcacaagttggttcgagtggagaggctagattcccacgacat |
424 |
Q |
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| T |
8642620 |
gttcataaatttgtactctttgcaaagtctggcacaagttggttggagtggagaggctagactcccacaacat |
8642692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 8642500 - 8642554
Alignment:
| Q |
199 |
tagtggaagagactagatttgcacaatgtagcaaatttgaattccaaccgagaga |
253 |
Q |
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| T |
8642500 |
tagtgaaaaagactagatttgcacaatgtagcaaatttgaattccaacagagaga |
8642554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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